Bra016518 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra016518 T001100_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH

DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.809 0.960
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW

WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.809 0.960
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN

NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.788 0.900
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN

NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.788 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016518.1-P AP2 8 59

Links

Other AP2 family TFs
Other Brassica rapa TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_27510 Aegilops tauschii F775_27510 I 0.000
F775_32121 Aegilops tauschii F775_32121 N 0.000
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.000
ANCCAN_05715 Ancylostoma caninum ANCCAN_05715 N 0.000
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.000
HMGB2 Arabidopsis thaliana AT1G20693 I 0.000
HMGB3 Arabidopsis thaliana AT1G20696 I 0.000
BGLB013830 Biomphalaria glabrata BGLB013830 N 0.000
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.000
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.000
Bo7g014280 Brassica oleracea Bo7g014280 I 0.000
CTRG_00206 Candida tropicalis CTRG_00206 I 0.000
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.000
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.000
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.000
Ca_10725 Cicer arietinum Ca_10725 I 0.000
Ca_19340 Cicer arietinum Ca_19340 I 0.000
Cla018386 Citrullus lanatus Cla018386 I 0.000
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.000
W97_04494 Coniosporium apollinis W97_04494 I 0.000
DICVIV_04699 Dictyocaulus viviparus DICVIV_04699 N 0.000
DILT_0001977801 Diphyllobothrium latum DILT_0001977801 N 0.000
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.000
gene00778-v1.0-hybrid Fragaria vesca gene00778-v1.0-hybrid N 0.000
GPLIN_000847800 Globodera pallida GPLIN_000847800 N 0.000
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.000
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.000
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.000
GLYMA20G01570 Glycine max GLYMA20G01570 N 0.000
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.000
GLYMA08G20341 Glycine max GLYMA08G20341 N 0.000
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.000
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.000
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.000
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.000
HelroG167700 Helobdella robusta HelroG167700 N 0.000
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.000
MLOC_68913 Hordeum vulgare MLOC_68913 N 0.000
TTAC_0000838901 Hydatigera taeniaeformis TTAC_0000838901 N 0.000
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.000
LEMA_P074670.1 Leptosphaeria maculans LEMA_P074670.1 I 0.000
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.000
LCUP018488 Lucilia cuprina LCUP018488 N 0.000
MDP0000242568 Malus domestica MDP0000242568 I 0.000
MDP0000275042 Malus domestica MDP0000275042 I 0.000
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.000
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.000
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.000
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.000
MCINX003696 Melitaea cinxia MCINX003696 N 0.000
mgf016363m Mimulus guttatus mgf016363m I 0.000
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.000
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.000
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.000
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.000
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.000
OBART06G28090 Oryza barthii OBART06G28090 I 0.000
OB06G35870 Oryza brachyantha OB06G35870 I 0.000
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.000
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.000
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.000
OLONG_000335 Oryza longistaminata OLONG_000335 N 0.000
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.000
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.000
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.000
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.000
OS06G0728000 Oryza sativa OS06G0728000 I 0.000
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.000
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.000
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.000
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.000
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.000
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.000
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.000
EFA77534.1 Polysphondylium pallidum EFA77534.1 N 0.000
Pm002934 Prunus mume Pm002934 I 0.000
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.000
Si007288m.g Setaria italica Si007288m.g I 0.000
Solyc03g032130.2 Solanum lycopersicum Solyc03g032130.2 N 0.000
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.000
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.000
SVUK_0000827101 Strongylus vulgaris SVUK_0000827101 N 0.000
TELCIR_05563 Teladorsagia circumcincta TELCIR_05563 N 0.000
TCM_042534 Theobroma cacao TCM_042534 I 0.000
D917_01243 Trichinella nativa D917_01243 N 0.000
D917_08464 Trichinella nativa D917_08464 N 0.000
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.000
Traes_5AL_D1358AF6E Triticum aestivum Traes_5AL_D1358AF6E I 0.000
Traes_5DL_BCFE39D13 Triticum aestivum Traes_5DL_BCFE39D13 N 0.000
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.000
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.000
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.000
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.000
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.000
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.000
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.000
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.000