Bra016761 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra016761 T001102_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA

TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.706 0.918
ERF027
M06566_2.00
Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN

NTGTCGGYRRNDNNDNNNNNN
Dap-seq
OMalley et al.(2016)
AT1G12630_col_a
0.688 0.918
ERF027
M06567_2.00
Arabidopsis thaliana
NNYYRCCGACANHNNN

NNNDNTGTCGGYRRNN
Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a
0.688 0.918
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016761.1-P AP2 13 63

Links

Other AP2 family TFs
Other Brassica rapa TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo8g064940 Brassica oleracea Bo8g064940 I 0.812
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I 0.790
PGSC0003DMG400012497 Solanum tuberosum PGSC0003DMG400012497 N 0.724
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.710
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.710
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.706
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.705
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.703
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.702
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.702
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.702
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.701
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.701
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.697
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.697
TCM_016176 Theobroma cacao TCM_016176 I 0.697
Cla011673 Citrullus lanatus Cla011673 I 0.692
MDP0000189347 Malus domestica MDP0000189347 I 0.691
ERF027 Arabidopsis thaliana AT1G12630 D 0.688
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.686
Bo9g036590 Brassica oleracea Bo9g036590 I 0.684
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.680
Bra027616 Brassica rapa Bra027616 I 0.680
Bra027615 Brassica rapa Bra027615 I 0.680
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.680
30147.m014311 Ricinus communis 30147.m014311 I 0.677