Bra017302 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra017302 T001106_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q5MAR7_BRANA
M09742_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.748 0.920
Q3HS44_BRANA
M09741_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.748 0.920
Q3HS43_BRANA
M09740_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.748 0.920
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN

NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.732 0.940
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN

NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.732 0.940
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH

DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.732 0.940
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA

TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.732 0.920
Q3HS42_BRANA
M09739_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII4_01
0.705 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra017302.1-P AP2 54 105

Links

Other AP2 family TFs
Other Brassica rapa TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28353.m000054 Ricinus communis 28353.m000054 I 0.723
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.748
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.682
BGIOSGA016884 Oryza indica BGIOSGA016884 I 0.686
Bo1g053270 Brassica oleracea Bo1g053270 I 0.732
Bo3g028500 Brassica oleracea Bo3g028500 I 0.716
Bo4g036220 Brassica oleracea Bo4g036220 I 0.748
Bo4g184540 Brassica oleracea Bo4g184540 I 0.809
Bo7g104770 Brassica oleracea Bo7g104770 I 0.733
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.745
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.735
Bra005314 Brassica rapa Bra005314 I 0.748
Bra012693 Brassica rapa Bra012693 I 0.732
Bra023026 Brassica rapa Bra023026 I 0.716
Bra040092 Brassica rapa Bra040092 I 0.732
BRADI3G50630 Brachypodium distachyon BRADI3G50630 I 0.678
BRADI5G17630 Brachypodium distachyon BRADI5G17630 N 0.711
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.748
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.735
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.748
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.712
Ca_12765 Cicer arietinum Ca_12765 I 0.727
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.740
Cla005715 Citrullus lanatus Cla005715 I 0.720
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.720
ERF038 Arabidopsis thaliana AT2G35700 D 0.732
ERF039 Arabidopsis thaliana AT4G16750 D 0.732
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.715
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.732
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.717
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.717
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.720
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.724
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.724
Gorai.007G087100 Gossypium raimondii Gorai.007G087100 I 0.678
GRMZM2G172936 Zea mays GRMZM2G172936 I 0.679
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.705
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.717
LPERR02G21590 Leersia perrieri LPERR02G21590 I 0.686
LPERR04G16900 Leersia perrieri LPERR04G16900 I 0.679
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.678
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.678
MLOC_3095 Hordeum vulgare MLOC_3095 I 0.686
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.717
OBART04G20820 Oryza barthii OBART04G20820 I 0.682
OGLUM02G27070 Oryza glumaepatula OGLUM02G27070 I 0.686
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.682
OGLUM04G20790 Oryza glumaepatula OGLUM04G20790 I 0.686
OMERI02G25910 Oryza meridionalis OMERI02G25910 I 0.686
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.682
OMERI04G17290 Oryza meridionalis OMERI04G17290 I 0.686
ONIVA02G28990 Oryza nivara ONIVA02G28990 I 0.686
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.682
ONIVA04G19090 Oryza nivara ONIVA04G19090 I 0.686
OPUNC02G24230 Oryza punctata OPUNC02G24230 I 0.686
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.682
OPUNC04G18530 Oryza punctata OPUNC04G18530 I 0.686
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.740
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.682
ORGLA04G0179000 Oryza glaberrima ORGLA04G0179000 I 0.686
ORUFI02G28010 Oryza rufipogon ORUFI02G28010 I 0.686
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.682
ORUFI04G22430 Oryza rufipogon ORUFI04G22430 I 0.686
OS02G0657000 Oryza sativa OS02G0657000 I 0.686
OS04G0549800 Oryza sativa OS04G0549800 I 0.682
OS04G0550200 Oryza sativa OS04G0550200 I 0.686
Pavir.Ga01093 Panicum virgatum Pavir.Ga01093 I 0.686
Pavir.Gb01128 Panicum virgatum Pavir.Gb01128 I 0.686
PK25970.1 Cannabis sativa PK25970.1 I 0.717
Pm023417 Prunus mume Pm023417 I 0.713
POPTR_0006s25500 Populus trichocarpa POPTR_0006s25500 I 0.709
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.713
Q3HS42_BRANA Brassica napus Q3HS42_BRANA D 0.705
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.748
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.748
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.748
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.709
Si012254m.g Setaria italica Si012254m.g I 0.686
TCM_005639 Theobroma cacao TCM_005639 I 0.678
TCM_015930 Theobroma cacao TCM_015930 I 0.726
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.748
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.732
Traes_6DL_3019F176A Triticum aestivum Traes_6DL_3019F176A I 0.686