Bra019777 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra019777 T001123_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.744 0.824
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.707 0.765
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.707 0.765
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.707 0.765
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.707 0.765
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.707 0.765
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.707 0.765
DREB1E
M00963_2.00
Arabidopsis thaliana
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana
0.678 0.784
DREB1E
M06589_2.00
Arabidopsis thaliana
NNNYYGYCGACATVD

HBATGTCGRCRRNNN
Dap-seq
OMalley et al.(2016)
DDF2_col_a
0.678 0.784
DREB1E
M09702_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_03
0.678 0.784
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra019777.1-P AP2 29 80

Links

Other AP2 family TFs
Other Brassica rapa TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo5g016750 Brassica oleracea Bo5g016750 I 0.767
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.744
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.744
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.744
Bra026963 Brassica rapa Bra026963 I 0.737
Bo8g108050 Brassica oleracea Bo8g108050 I 0.737
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.726
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.726
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.722
mgf019061m Mimulus guttatus mgf019061m I 0.714
mgf017136m Mimulus guttatus mgf017136m I 0.714
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.710
DREB1F Arabidopsis thaliana AT1G12610 D 0.707
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.707
Bo01335s010 Brassica oleracea Bo01335s010 I 0.704
Bra016763 Brassica rapa Bra016763 I 0.704
Bra027612 Brassica rapa Bra027612 I 0.701
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.700
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.700
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.697
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.697
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.696
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.695
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.692
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.692
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.691
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.691
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.691
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.690
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.690
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.689
PK23332.1 Cannabis sativa PK23332.1 I 0.689
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.689
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.689
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.689
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.689
mgf026642m Mimulus guttatus mgf026642m I 0.689
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.686
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.686
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.684
Cla011674 Citrullus lanatus Cla011674 I 0.684
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.683
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.682
Cla006315 Citrullus lanatus Cla006315 I 0.681
TCM_016175 Theobroma cacao TCM_016175 I 0.680
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.679
DREB1E Arabidopsis thaliana AT1G63030 D 0.678
30190.m011119 Ricinus communis 30190.m011119 I 0.678
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.678
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.677
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.677
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.677