Bra021049 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra021049 T001132_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.724 0.843
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.724 0.843
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.724 0.843
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.709 0.824
ERF6
M01621_2.00 		Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN		 PBM
Weirauch et al.(2014)
pTH7228 		0.702 0.804
ERF6
M06637_2.00 		Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF6_col 		0.702 0.804
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.691 0.725
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.691 0.725
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.688 0.784
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.687 0.765
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.687 0.765
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.687 0.765
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021049.1-P AP2 140 192

Links

Other AP2 family TFs
Other Brassica rapa TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo8g049450 Brassica oleracea Bo8g049450 I 0.776
Bostr.30275s0206 Boechera stricta Bostr.30275s0206 I 0.754
ATERF6 Arabidopsis lyrata fgenesh2_kg.7__2560__AT4G17490.1 I 0.754
Thhalv10027543m.g Eutrema salsugineum Thhalv10027543m.g I 0.752
Carubv10005314m.g Capsella rubella Carubv10005314m.g I 0.752
Cagra.3356s0040 Capsella grandiflora Cagra.3356s0040 I 0.752
Bra017612 Brassica rapa Bra017612 I 0.739
Bra027447 Brassica rapa Bra027447 I 0.739
Bo9g069410 Brassica oleracea Bo9g069410 I 0.731
Cagra.3675s0006 Capsella grandiflora Cagra.3675s0006 I 0.730
Carubv10028472m.g Capsella rubella Carubv10028472m.g I 0.730
ERF5 Arabidopsis thaliana AT5G47230 D 0.724
ERF5 Arabidopsis lyrata fgenesh2_kg.8__69__AT5G47230.1 I 0.724
Thhalv10000931m.g Eutrema salsugineum Thhalv10000931m.g I 0.724
evm.TU.supercontig_89.42 Carica papaya evm.TU.supercontig_89.42 I 0.720
Bra040158 Brassica rapa Bra040158 I 0.720
Bo1g017580 Brassica oleracea Bo1g017580 I 0.718
GLYMA05G05130 Glycine max GLYMA05G05130 I 0.718
Ca_12774 Cicer arietinum Ca_12774 I 0.718
GLYMA11G03900 Glycine max GLYMA11G03900 I 0.718
Bra017493 Brassica rapa Bra017493 I 0.716
GLYMA17G15460 Glycine max GLYMA17G15460 I 0.715
AMTR_s00111p00113030 Amborella trichopoda AMTR_s00111p00113030 I 0.715
Gorai.008G232600 Gossypium raimondii Gorai.008G232600 I 0.711
MDP0000923579 Malus domestica MDP0000923579 I 0.711
MDP0000309801 Malus domestica MDP0000309801 I 0.711
Eucgr.D02111 Eucalyptus grandis Eucgr.D02111 I 0.711
MDP0000791464 Malus domestica MDP0000791464 I 0.711
MDP0000240840 Malus domestica MDP0000240840 I 0.711
SapurV1A.1153s0060 Salix purpurea SapurV1A.1153s0060 I 0.711
SapurV1A.1425s0060 Salix purpurea SapurV1A.1425s0060 I 0.711
PRUPE_ppa007892mg Prunus persica PRUPE_ppa007892mg I 0.710
Pm023378 Prunus mume Pm023378 I 0.710
LjT33A04.100.nc Lotus japonicus LjT33A04.100.nc I 0.710
ERF5_TOBAC Nicotiana tabacum ERF5_TOBAC D 0.709
28552.m000029 Ricinus communis 28552.m000029 I 0.708
mgf002457m Mimulus guttatus mgf002457m I 0.708
Eucgr.K00126 Eucalyptus grandis Eucgr.K00126 I 0.707
VIT_16s0013g01120 Vitis vinifera VIT_16s0013g01120 I 0.707
MTR_4g100420 Medicago truncatula MTR_4g100420 I 0.703
ERF6 Arabidopsis thaliana AT4G17490 D 0.702
Eucgr.E00377 Eucalyptus grandis Eucgr.E00377 I 0.701
cassava33325.m1 Manihot esculenta cassava33325.m1 I 0.701
Gorai.008G232700 Gossypium raimondii Gorai.008G232700 I 0.701
POPTR_0003s07850 Populus trichocarpa POPTR_0003s07850 I 0.700
Cla005706 Citrullus lanatus Cla005706 I 0.699
Bostr.26833s0076 Boechera stricta Bostr.26833s0076 I 0.698
Bra024953 Brassica rapa Bra024953 I 0.698
Bo7g077410 Brassica oleracea Bo7g077410 I 0.698
SapurV1A.1065s0030 Salix purpurea SapurV1A.1065s0030 I 0.697
cassava4888.m1 Manihot esculenta cassava4888.m1 I 0.697
Pm019545 Prunus mume Pm019545 I 0.697
Solyc08g078190.1 Solanum lycopersicum Solyc08g078190.1 I 0.697
SapurV1A.0059s0640 Salix purpurea SapurV1A.0059s0640 I 0.697
PRUPE_ppa008915mg Prunus persica PRUPE_ppa008915mg I 0.697
POPTR_0003s15040 Populus trichocarpa POPTR_0003s15040 I 0.697
POPTR_0001s11780 Populus trichocarpa POPTR_0001s11780 I 0.697
orange1.1g023209m.g Citrus sinensis orange1.1g023209m.g I 0.696
Cagra.0542s0055 Capsella grandiflora Cagra.0542s0055 I 0.696
MTR_4g100450 Medicago truncatula MTR_4g100450 I 0.696
Carubv10028209m.g Capsella rubella Carubv10028209m.g I 0.696
Ciclev10005570m.g Citrus clementina Ciclev10005570m.g I 0.696
Gorai.003G112200 Gossypium raimondii Gorai.003G112200 I 0.695
POPTR_0001s15400 Populus trichocarpa POPTR_0001s15400 I 0.695
27401.m000291 Ricinus communis 27401.m000291 I 0.695
ERF104 Arabidopsis lyrata fgenesh2_kg.8__2143__AT5G61600.1 I 0.695
gene21166-v1.0-hybrid Fragaria vesca gene21166-v1.0-hybrid I 0.695
MDP0000755622 Malus domestica MDP0000755622 I 0.694
Thhalv10005566m.g Eutrema salsugineum Thhalv10005566m.g I 0.694
Cla003677 Citrullus lanatus Cla003677 I 0.694
cassava18871.valid.m1 Manihot esculenta cassava18871.valid.m1 I 0.694
cassava18872.valid.m1 Manihot esculenta cassava18872.valid.m1 I 0.694
MDP0000143745 Malus domestica MDP0000143745 I 0.694
TCM_014847 Theobroma cacao TCM_014847 I 0.693
Thhalv10014591m.g Eutrema salsugineum Thhalv10014591m.g I 0.692
gene10845-v1.0-hybrid Fragaria vesca gene10845-v1.0-hybrid I 0.692
cassava4887.m1 Manihot esculenta cassava4887.m1 I 0.692
ERF104 Arabidopsis thaliana AT5G61600 D 0.691
Bra035732 Brassica rapa Bra035732 I 0.691
Bo9g100030 Brassica oleracea Bo9g100030 I 0.691
Gorai.008G214000 Gossypium raimondii Gorai.008G214000 I 0.690
MDP0000430682 Malus domestica MDP0000430682 I 0.690
VIT_16s0013g01110 Vitis vinifera VIT_16s0013g01110 I 0.689
VIT_16s0013g01090 Vitis vinifera VIT_16s0013g01090 I 0.689
VIT_16s0013g01000 Vitis vinifera VIT_16s0013g01000 I 0.689
Carubv10027063m.g Capsella rubella Carubv10027063m.g I 0.688
PK02330.1 Cannabis sativa PK02330.1 D 0.688
fgenesh2_kg.8__1005__AT5G51190.1 Arabidopsis lyrata fgenesh2_kg.8__1005__AT5G51190.1 I 0.687
ERF105 Arabidopsis thaliana AT5G51190 D 0.687
Bostr.15774s0261 Boechera stricta Bostr.15774s0261 I 0.687
CM0905.90.nd Lotus japonicus CM0905.90.nd I 0.687
GLYMA10G23440 Glycine max GLYMA10G23440 I 0.686
GLYMA20G16910 Glycine max GLYMA20G16910 I 0.686
Lus10042996.g Linum usitatissimum Lus10042996.g I 0.685
VIT_16s0013g00950 Vitis vinifera VIT_16s0013g00950 I 0.684
VIT_16s0013g00980 Vitis vinifera VIT_16s0013g00980 I 0.684
Pavir.J22470 Panicum virgatum Pavir.J22470 I 0.683
Pavir.J21804 Panicum virgatum Pavir.J21804 I 0.683
VIT_16s0013g00970 Vitis vinifera VIT_16s0013g00970 I 0.683
Sb06g024380 Sorghum bicolor Sb06g024380 I 0.683
Cagra.3782s0036 Capsella grandiflora Cagra.3782s0036 I 0.683
Lus10032499.g Linum usitatissimum Lus10032499.g I 0.683
OGLUM04G20610 Oryza glumaepatula OGLUM04G20610 I 0.682
ONIVA04G18910 Oryza nivara ONIVA04G18910 I 0.682
OBART04G20640 Oryza barthii OBART04G20640 I 0.682
BGIOSGA016874 Oryza indica BGIOSGA016874 I 0.682
BGIOSGA016873 Oryza indica BGIOSGA016873 I 0.682
BRADI5G17490 Brachypodium distachyon BRADI5G17490 I 0.682
Pavir.Ib02259 Panicum virgatum Pavir.Ib02259 I 0.682
OB04G27680 Oryza brachyantha OB04G27680 I 0.682
OPUNC04G18310 Oryza punctata OPUNC04G18310 I 0.682
ORUFI04G22240 Oryza rufipogon ORUFI04G22240 I 0.682
OS04G0547600 Oryza sativa OS04G0547600 I 0.682
Sb01g028930 Sorghum bicolor Sb01g028930 I 0.682
ORGLA04G0177300 Oryza glaberrima ORGLA04G0177300 I 0.682
ORUFI04G22260 Oryza rufipogon ORUFI04G22260 I 0.682
ORGLA04G0177200 Oryza glaberrima ORGLA04G0177200 I 0.682
OPUNC04G18320 Oryza punctata OPUNC04G18320 I 0.682
GRMZM5G805505 Zea mays GRMZM5G805505 I 0.681
Si011648m.g Setaria italica Si011648m.g I 0.681
Traes_2AL_E5A9615E2 Triticum aestivum Traes_2AL_E5A9615E2 I 0.681
Traes_2BL_859E9B1DA Triticum aestivum Traes_2BL_859E9B1DA I 0.681
Gorai.001G051200 Gossypium raimondii Gorai.001G051200 I 0.681
Sb06g024360 Sorghum bicolor Sb06g024360 I 0.681
MLOC_69987 Hordeum vulgare MLOC_69987 I 0.681
Pavir.Gb01173 Panicum virgatum Pavir.Gb01173 I 0.681
GRMZM2G475678 Zea mays GRMZM2G475678 I 0.681
Sb06g024390 Sorghum bicolor Sb06g024390 I 0.680
Aquca_067_00007 Aquilegia coerulea Aquca_067_00007 I 0.679
OMERI04G17110 Oryza meridionalis OMERI04G17110 I 0.679
Pavir.Ga01118 Panicum virgatum Pavir.Ga01118 I 0.678
Cagra.3782s0035 Capsella grandiflora Cagra.3782s0035 I 0.677
Bra029319 Brassica rapa Bra029319 I 0.677
Aquca_067_00006 Aquilegia coerulea Aquca_067_00006 I 0.677
Bo2g161480 Brassica oleracea Bo2g161480 I 0.677
Carubv10027677m.g Capsella rubella Carubv10027677m.g I 0.677