Bra021871 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra021871 T001138_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.850 0.960
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.850 0.960
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.850 0.960
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.794 0.860
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.785 0.820
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.779 0.820
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.767 0.760
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.738 0.800
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.733 0.680
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.730 0.760
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.730 0.760
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.730 0.760
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.721 0.740
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.719 0.740
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.718 0.720
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR

YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.715 0.800
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY

RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.715 0.800
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.712 0.780
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.712 0.780
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.712 0.780
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.711 0.760
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.711 0.760
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.708 0.780
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.708 0.780
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH

DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.708 0.720
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD

HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.708 0.720
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.708 0.760
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.707 0.740
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.707 0.740
EREBP1
M09708_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.703 0.680
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.702 0.700
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN

NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.700 0.740
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN

NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.700 0.740
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.698 0.660
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.698 0.780
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.698 0.780
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.698 0.780
O65242_TOBAC
M09730_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.697 0.620
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.696 0.680
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN

NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.696 0.680
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD

HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.696 0.680
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.695 0.740
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.695 0.740
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.695 0.740
RAP2-6
M00717_2.00
Arabidopsis thaliana
NBGCYGNH

DNCRGCVN
PBM
Chang et al.(2013)
pTH7225
0.690 0.760
RAP2-6
M00841_2.00
Arabidopsis thaliana
NGCCGHHNNN

NNNDDCGGCN
PBM
Franco-Zorrilla et al.(2014)
RAP2.6
0.690 0.760
RAP2-6
M06579_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYMD

HKRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
RAP26_col_a
0.690 0.760
RAP2-6
M06580_2.00
Arabidopsis thaliana
CGCCGY

RCGGCG
Dap-seq
OMalley et al.(2016)
RAP26_colamp_a
0.690 0.760
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.689 0.720
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN

NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.689 0.700
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN

NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.689 0.700
RAP2-3
M01050_2.00
Arabidopsis thaliana
CGCCGCCR

YGGCGGCG
PBM
Sullivan et al.(2014)
pTH8811
0.687 0.720
RAP2-3
M00847_2.00
Arabidopsis thaliana
NMGCCGCCDN

NHGGCGGCKN
PBM
Franco-Zorrilla et al.(2014)
RAP2.3
0.687 0.720
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD

HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.687 0.760
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH

DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.687 0.760
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN

NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.686 0.740
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN

NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.686 0.740
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD

HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.686 0.740
ERF1B
M09703_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.686 0.740
ERF1B
M09704_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.686 0.740
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN

NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.685 0.720
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN

NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.685 0.720
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN

NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.685 0.720
ERF091
M06638_2.00
Arabidopsis thaliana
NNHNYHDCCGCCGCCRY

RYGGCGGCGGHDRNDNN
Dap-seq
OMalley et al.(2016)
AT4G18450_col_a
0.683 0.760
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN

NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.682 0.720
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN

NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.682 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021871.1-P AP2 68 119

Links

Other AP2 family TFs
Other Brassica rapa TFs

1721 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_018_00039 Aquilegia coerulea Aquca_018_00039 I 0.000
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I 0.000
BRADI5G05110 Brachypodium distachyon BRADI5G05110 N 0.000
PK06841.1 Cannabis sativa PK06841.1 I 0.000
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I 0.000
Carubv10009081m.g Capsella rubella Carubv10009081m.g I 0.000
evm.TU.supercontig_115.71 Carica papaya evm.TU.supercontig_115.71 N 0.000
Cla023112 Citrullus lanatus Cla023112 I 0.000
Cla019147 Citrullus lanatus Cla019147 N 0.000
Ciclev10009285m.g Citrus clementina Ciclev10009285m.g I 0.000
orange1.1g025665m.g Citrus sinensis orange1.1g025665m.g I 0.000
Cucsa.282100 Cucumis sativus Cucsa.282100 N 0.000
Cucsa.088960 Cucumis sativus Cucsa.088960 I 0.000
Eucgr.C02208 Eucalyptus grandis Eucgr.C02208 I 0.000
gene17273-v1.0-hybrid Fragaria vesca gene17273-v1.0-hybrid I 0.000
gene23715-v1.0-hybrid Fragaria vesca gene23715-v1.0-hybrid I 0.000
GLYMA17G06610 Glycine max GLYMA17G06610 I 0.000
GLYMA16G26291 Glycine max GLYMA16G26291 I 0.000
GLYMA05G38530 Glycine max GLYMA05G38530 I 0.000
GLYMA09G06770 Glycine max GLYMA09G06770 I 0.000
GLYMA13G00480 Glycine max GLYMA13G00480 I 0.000
GLYMA15G18070 Glycine max GLYMA15G18070 I 0.000
Gorai.013G242800 Gossypium raimondii Gorai.013G242800 I 0.000
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I 0.000
MLOC_52192 Hordeum vulgare MLOC_52192 I 0.000
Lus10006951.g Linum usitatissimum Lus10006951.g I 0.000
MDP0000133262 Malus domestica MDP0000133262 I 0.000
MDP0000318229 Malus domestica MDP0000318229 I 0.000
cassava2552.valid.m1 Manihot esculenta cassava2552.valid.m1 I 0.000
cassava2997.m1 Manihot esculenta cassava2997.m1 I 0.000
cassava2551.valid.m1 Manihot esculenta cassava2551.valid.m1 I 0.000
MTR_2g038040 Medicago truncatula MTR_2g038040 I 0.000
mgf019723m Mimulus guttatus mgf019723m I 0.000
mgf024029m Mimulus guttatus mgf024029m I 0.000
GSMUA_Achr7G16000_001 Musa acuminata GSMUA_Achr7G16000_001 I 0.000
GSMUA_Achr10G23370_001 Musa acuminata GSMUA_Achr10G23370_001 I 0.000
OBART02G01550 Oryza barthii OBART02G01550 I 0.000
ORGLA02G0014200 Oryza glaberrima ORGLA02G0014200 I 0.000
OGLUM02G01420 Oryza glumaepatula OGLUM02G01420 I 0.000
BGIOSGA007229 Oryza indica BGIOSGA007229 I 0.000
OMERI02G00890 Oryza meridionalis OMERI02G00890 I 0.000
ONIVA02G01430 Oryza nivara ONIVA02G01430 I 0.000
OPUNC02G01010 Oryza punctata OPUNC02G01010 I 0.000
ORUFI02G01530 Oryza rufipogon ORUFI02G01530 I 0.000
TDR Oryza sativa OS02G0120500 I 0.000
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I 0.000
POPTR_0006s07440 Populus trichocarpa POPTR_0006s07440 N 0.000
POPTR_0018s13860 Populus trichocarpa POPTR_0018s13860 I 0.000
Pm008898 Prunus mume Pm008898 I 0.000
Pm020879 Prunus mume Pm020879 I 0.000
Pm020878 Prunus mume Pm020878 N 0.000
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I 0.000
PRUPE_ppa010972mg Prunus persica PRUPE_ppa010972mg I 0.000
30198.m000869 Ricinus communis 30198.m000869 I 0.000
SapurV1A.0140s0210 Salix purpurea SapurV1A.0140s0210 I 0.000
Si019518m.g Setaria italica Si019518m.g I 0.000
Si006500m.g Setaria italica Si006500m.g I 0.000
Solyc07g018010.2 Solanum lycopersicum Solyc07g018010.2 I 0.000
PGSC0003DMG400004087 Solanum tuberosum PGSC0003DMG400004087 I 0.000
Sb04g001650 Sorghum bicolor Sb04g001650 I 0.000
TCM_039471 Theobroma cacao TCM_039471 I 0.000
Traes_2AL_411B944D6 Triticum aestivum Traes_2AL_411B944D6 N 0.000
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I 0.000
VIT_11s0052g00100 Vitis vinifera VIT_11s0052g00100 I 0.000
GRMZM2G139372 Zea mays GRMZM2G139372 N 0.000
GRMZM2G042893 Zea mays GRMZM2G042893 N 0.000