Bra022770 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra022770 T001143_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8S2T3_BRANA
M09745_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.808 0.980
Q6T3U0_BRANA
M09743_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.808 0.980
Q8W242_BRANA
M09747_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF_01
0.710 0.920
Q8S2T2_BRANA
M09744_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF17_01
0.710 0.920
A6N8P3_BRANA
M09738_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBI5_01
0.710 0.920
Q8S2T5_BRANA
M09746_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF5_01
0.708 0.960
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.706 0.880
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.706 0.880
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.706 0.880
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.702 0.900
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.702 0.900
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.699 0.880
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.699 0.880
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.699 0.880
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.699 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022770.1-P AP2 48 99

Links

Other AP2 family TFs
Other Brassica rapa TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra019162 Brassica rapa Bra019162 I 0.808
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.808
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.808
Bo7g110320 Brassica oleracea Bo7g110320 I 0.808
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.746
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.728
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.725
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.722
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.716
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.712
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.712
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.712
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.712
Q8W242_BRANA Brassica napus Q8W242_BRANA D 0.710
Bo8g050740 Brassica oleracea Bo8g050740 I 0.710
A6N8P3_BRANA Brassica napus A6N8P3_BRANA D 0.710
Bra010461 Brassica rapa Bra010461 I 0.710
Q8S2T2_BRANA Brassica napus Q8S2T2_BRANA D 0.710
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.709
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.709
Bo3g024240 Brassica oleracea Bo3g024240 I 0.708
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.708
DREB1C Arabidopsis thaliana AT4G25470 D 0.706
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.706
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.705
30147.m014313 Ricinus communis 30147.m014313 I 0.705
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.703
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.702
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.702
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.702
DREB1D Arabidopsis thaliana AT5G51990 D 0.702
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.702
Bo9g104770 Brassica oleracea Bo9g104770 I 0.702
Bra028290 Brassica rapa Bra028290 I 0.702
Cla002362 Citrullus lanatus Cla002362 I 0.702
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.702
Cla006315 Citrullus lanatus Cla006315 I 0.701
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.700
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.699
PK23332.1 Cannabis sativa PK23332.1 I 0.699
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.699
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.699
DREB1A Arabidopsis thaliana AT4G25480 D 0.699
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.699
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.699
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.699
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.694
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.693
mgf026642m Mimulus guttatus mgf026642m I 0.693
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.691
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.687
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.682
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.682
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.682
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.682
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.682
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.681
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.681
Bo8g050800 Brassica oleracea Bo8g050800 I 0.677
Bra010460 Brassica rapa Bra010460 I 0.677
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.677
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.677