Bra023026 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra023026 T001145_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA

TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.784 0.920
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN

NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.784 0.900
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN

NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.784 0.900
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH

DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.784 0.900
Q5MAR7_BRANA
M09742_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.784 0.900
Q3HS44_BRANA
M09741_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.784 0.900
Q3HS43_BRANA
M09740_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.784 0.900
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.760 0.880
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.760 0.880
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.749 0.860
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.749 0.860
Q3HS42_BRANA
M09739_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII4_01
0.741 0.880
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.737 0.900
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.727 0.820
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.727 0.820
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.727 0.820
gw1.8.141.1
M01642_2.00
Physcomitrella patens
CACCGACM

KGTCGGTG
PBM
Weirauch et al.(2014)
pTH8456
0.698 0.720
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN

NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.690 0.820
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH

DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.690 0.820
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN

NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.690 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra023026.1-P AP2 54 105

Links

Other AP2 family TFs
Other Brassica rapa TFs

426 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACAC_0000445401 Angiostrongylus cantonensis ACAC_0000445401 N 0.000
ACAC_0000956101 Angiostrongylus cantonensis ACAC_0000956101 I 0.000
ACOC_0000749401 Angiostrongylus costaricensis ACOC_0000749401 I 0.000
ANCCAN_20599 Ancylostoma caninum ANCCAN_20599 I 0.000
ANCCAN_22066 Ancylostoma caninum ANCCAN_22066 I 0.000
ANCCEY_12461 Ancylostoma ceylanicum ANCCEY_12461 I 0.000
ANCDUO_15746 Ancylostoma duodenale ANCDUO_15746 I 0.000
ASIM_0001548701 Anisakis simplex ASIM_0001548701 I 0.000
ASU_00971 Ascaris suum ASU_00971 I 0.000
ASU_13587 Ascaris suum ASU_13587 I 0.000
Bm5457 Brugia malayi Bm5457 I 0.000
BTMF_0001565301 Brugia timori BTMF_0001565301 I 0.000
BXY_0053200 Bursaphelenchus xylophilus BXY_0053200 I 0.000
BXY_0861500 Bursaphelenchus xylophilus BXY_0861500 I 0.000
BXY_1082600 Bursaphelenchus xylophilus BXY_1082600 I 0.000
CBG03466 Caenorhabditis briggsae CBG03466 I 0.000
CBG03860 Caenorhabditis briggsae CBG03860 I 0.000
CBG04240 Caenorhabditis briggsae CBG04240 I 0.000
CBG13142 Caenorhabditis briggsae CBG13142 I 0.000
CBG14996 Caenorhabditis briggsae CBG14996 I 0.000
CBG14997 Caenorhabditis briggsae CBG14997 I 0.000
CBG22587 Caenorhabditis briggsae CBG22587 I 0.000
CBG22776 Caenorhabditis briggsae CBG22776 I 0.000
CBN00088 Caenorhabditis brenneri CBN00088 I 0.000
CBN04415 Caenorhabditis brenneri CBN04415 I 0.000
CBN05776 Caenorhabditis brenneri CBN05776 I 0.000
CBN08474 Caenorhabditis brenneri CBN08474 I 0.000
CBN21958 Caenorhabditis brenneri CBN21958 I 0.000
CBN28641 Caenorhabditis brenneri CBN28641 I 0.000
CBN32300 Caenorhabditis brenneri CBN32300 I 0.000
CGOC_0000279901 Cylicostephanus goldi CGOC_0000279901 I 0.000
CJA02727 Caenorhabditis japonica CJA02727 I 0.000
CJA06107 Caenorhabditis japonica CJA06107 I 0.000
CJA14035 Caenorhabditis japonica CJA14035 I 0.000
CJA14248 Caenorhabditis japonica CJA14248 I 0.000
CJA14611 Caenorhabditis japonica CJA14611 I 0.000
CJA18307 Caenorhabditis japonica CJA18307 I 0.000
CJA19445 Caenorhabditis japonica CJA19445 I 0.000
CJA39530 Caenorhabditis japonica CJA39530 I 0.000
CRE07033 Caenorhabditis remanei CRE07033 I 0.000
CRE07034 Caenorhabditis remanei CRE07034 I 0.000
CRE07035 Caenorhabditis remanei CRE07035 I 0.000
CRE08264 Caenorhabditis remanei CRE08264 I 0.000
CRE09416 Caenorhabditis remanei CRE09416 I 0.000
CRE10779 Caenorhabditis remanei CRE10779 I 0.000
CRE21925 Caenorhabditis remanei CRE21925 I 0.000
CRE22212 Caenorhabditis remanei CRE22212 I 0.000
CRE24933 Caenorhabditis remanei CRE24933 I 0.000
CRE26423 Caenorhabditis remanei CRE26423 I 0.000
CRE29874 Caenorhabditis remanei CRE29874 I 0.000
DICVIV_01644 Dictyocaulus viviparus DICVIV_01644 I 0.000
DICVIV_11073 Dictyocaulus viviparus DICVIV_11073 I 0.000
DME_0000747901 Dracunculus medinensis DME_0000747901 I 0.000
EEL_0000204901 Elaeophora elaphi EEL_0000204901 I 0.000
EEL_0000265301 Elaeophora elaphi EEL_0000265301 I 0.000
EVEC_0000864401 Enterobius vermicularis EVEC_0000864401 I 0.000
genemark-nMf.1.1.scaf00584-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00584-processed-gene-0.4 I 0.000
genemark-nMf.1.1.scaf02603-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf02603-processed-gene-0.3 I 0.000
GPLIN_000327200 Globodera pallida GPLIN_000327200 I 0.000
Hba_12763 Heterorhabditis bacteriophora Hba_12763 I 0.000
Hba_17038 Heterorhabditis bacteriophora Hba_17038 I 0.000
Hba_17946 Heterorhabditis bacteriophora Hba_17946 I 0.000
HCOI00094500 Haemonchus contortus HCOI00094500 I 0.000
HCOI01442000 Haemonchus contortus HCOI01442000 I 0.000
HCOI01927800 Haemonchus contortus HCOI01927800 I 0.000
HCOI01945300 Haemonchus contortus HCOI01945300 I 0.000
HCOI02126500 Haemonchus contortus HCOI02126500 I 0.000
HPBE_0001033901 Heligmosomoides bakeri HPBE_0001033901 I 0.000
HPBE_0001438801 Heligmosomoides bakeri HPBE_0001438801 I 0.000
HPBE_0001524301 Heligmosomoides bakeri HPBE_0001524301 I 0.000
HPLM_0000308401 Haemonchus placei HPLM_0000308401 I 0.000
HPLM_0001358001 Haemonchus placei HPLM_0001358001 I 0.000
L596_g25910 Steinernema carpocapsae L596_g25910 I 0.000
L596_g26401 Steinernema carpocapsae L596_g26401 I 0.000
L596_g7829 Steinernema carpocapsae L596_g7829 I 0.000
L596_g9277 Steinernema carpocapsae L596_g9277 I 0.000
L596_g9904 Steinernema carpocapsae L596_g9904 I 0.000
L889_g15424 Steinernema feltiae L889_g15424 I 0.000
L889_g16305 Steinernema feltiae L889_g16305 I 0.000
L889_g25097 Steinernema feltiae L889_g25097 I 0.000
L889_g31970 Steinernema feltiae L889_g31970 I 0.000
L889_g366 Steinernema feltiae L889_g366 I 0.000
L892_g17146 Steinernema scapterisci L892_g17146 I 0.000
L892_g17832 Steinernema scapterisci L892_g17832 I 0.000
L892_g186 Steinernema scapterisci L892_g186 I 0.000
L892_g3438 Steinernema scapterisci L892_g3438 I 0.000
L893_g263 Steinernema glaseri L893_g263 I 0.000
L893_g33656 Steinernema glaseri L893_g33656 I 0.000
L893_g5404 Steinernema glaseri L893_g5404 I 0.000
L893_g6023 Steinernema glaseri L893_g6023 I 0.000
L893_g6565 Steinernema glaseri L893_g6565 I 0.000
L898_g11608 Steinernema monticolum L898_g11608 I 0.000
L898_g18440 Steinernema monticolum L898_g18440 I 0.000
L898_g5338 Steinernema monticolum L898_g5338 I 0.000
L898_g9613 Steinernema monticolum L898_g9613 I 0.000
LOAG_07549 Loa loa LOAG_07549 I 0.000
LOAG_08636 Loa loa LOAG_08636 I 0.000
MhA1_Contig1031.frz3.gene17 Meloidogyne hapla MhA1_Contig1031.frz3.gene17 N 0.000
MhA1_Contig691.frz3.gene13 Meloidogyne hapla MhA1_Contig691.frz3.gene13 I 0.000
Minc11307 Meloidogyne incognita Minc11307 I 0.000
nAv.1.0.1.g08447 Acanthocheilonema viteae nAv.1.0.1.g08447 I 0.000
nAv.1.0.1.g09196 Acanthocheilonema viteae nAv.1.0.1.g09196 I 0.000
NBR_0000015501 Nippostrongylus brasiliensis NBR_0000015501 I 0.000
nDi.2.2.2.g03974 Dirofilaria immitis nDi.2.2.2.g03974 I 0.000
nDi.2.2.2.g09348 Dirofilaria immitis nDi.2.2.2.g09348 I 0.000
NECAME_02375 Necator americanus NECAME_02375 I 0.000
NECAME_11708 Necator americanus NECAME_11708 N 0.000
nLs.2.1.2.g04051 Litomosoides sigmodontis nLs.2.1.2.g04051 I 0.000
nLs.2.1.2.g04526 Litomosoides sigmodontis nLs.2.1.2.g04526 I 0.000
nOo.2.0.1.g02628 Onchocerca ochengi nOo.2.0.1.g02628 I 0.000
nOo.2.0.1.g03859 Onchocerca ochengi nOo.2.0.1.g03859 I 0.000
OESDEN_00859 Oesophagostomum dentatum OESDEN_00859 I 0.000
OFLC_0000076301 Onchocerca flexuosa OFLC_0000076301 I 0.000
Ppa-nhr-14 Pristionchus pacificus PPA06980 I 0.000
PPA14696 Pristionchus pacificus PPA14696 I 0.000
Ppa-nhr-61 Pristionchus pacificus PPA27722 I 0.000
Ppa-nhr-3 Pristionchus pacificus PPA28597 I 0.000
PTRK_0000748600 Parastrongyloides trichosuri PTRK_0000748600 I 0.000
PTRK_0001236400 Parastrongyloides trichosuri PTRK_0001236400 I 0.000
PTRK_0001591500 Parastrongyloides trichosuri PTRK_0001591500 I 0.000
RSKR_0000178700 Rhabditophanes kr3021 RSKR_0000178700 I 0.000
RSKR_0000426600 Rhabditophanes kr3021 RSKR_0000426600 N 0.000
RSKR_0001175400 Rhabditophanes kr3021 RSKR_0001175400 I 0.000
scaffold1338-EXSNAP2012.3 Pristionchus exspectatus scaffold1338-EXSNAP2012.3 I 0.000
scaffold277-EXSNAP2012.12 Pristionchus exspectatus scaffold277-EXSNAP2012.12 I 0.000
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I 0.000
scaffold488-EXSNAP2012.17 Pristionchus exspectatus scaffold488-EXSNAP2012.17 I 0.000
scaffold52-EXSNAP2012.30 Pristionchus exspectatus scaffold52-EXSNAP2012.30 I 0.000
SMUV_0000230901 Syphacia muris SMUV_0000230901 I 0.000
SMUV_0000835401 Syphacia muris SMUV_0000835401 I 0.000
SMUV_0001036101 Syphacia muris SMUV_0001036101 I 0.000
SPAL_0000533900 Strongyloides papillosus SPAL_0000533900 I 0.000
SPAL_0001056000 Strongyloides papillosus SPAL_0001056000 I 0.000
SSTP_0000230100 Strongyloides stercoralis SSTP_0000230100 I 0.000
SSTP_0000860300 Strongyloides stercoralis SSTP_0000860300 I 0.000
SVE_0105800 Strongyloides venezuelensis SVE_0105800 I 0.000
SVE_1768400 Strongyloides venezuelensis SVE_1768400 I 0.000
SVUK_0000195901 Strongylus vulgaris SVUK_0000195901 I 0.000
TCLT_0000342401 Thelazia callipaeda TCLT_0000342401 I 0.000
TCLT_0000612301 Thelazia callipaeda TCLT_0000612301 I 0.000
TCNE_0000582701 Toxocara canis TCNE_0000582701 I 0.000
TELCIR_07460 Teladorsagia circumcincta TELCIR_07460 I 0.000
TELCIR_16512 Teladorsagia circumcincta TELCIR_16512 N 0.000
nhr-4 Caenorhabditis elegans WBGene00003603 I 0.000
nhr-14 Caenorhabditis elegans WBGene00003613 I 0.000
nhr-21 Caenorhabditis elegans WBGene00003620 I 0.000
nhr-34 Caenorhabditis elegans WBGene00003627 D 0.000
nhr-61 Caenorhabditis elegans WBGene00003651 I 0.000
nhr-62 Caenorhabditis elegans WBGene00003652 I 0.000
nhr-100 Caenorhabditis elegans WBGene00003690 I 0.000
nhr-118 Caenorhabditis elegans WBGene00003708 I 0.000
nhr-138 Caenorhabditis elegans WBGene00003728 I 0.000
WBGene00239376 Onchocerca volvulus WBGene00239376 I 0.000
WBGene00240560 Onchocerca volvulus WBGene00240560 I 0.000