Bra027177 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra027177 T001177_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN

NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.787 0.960
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN

NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.787 0.960
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.742 0.840
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.742 0.840
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.742 0.840
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.742 0.860
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.742 0.860
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.733 0.840
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.733 0.840
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.706 0.840
Q5MAR7_BRANA
M09742_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.701 0.840
Q3HS44_BRANA
M09741_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.701 0.840
Q3HS43_BRANA
M09740_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.701 0.840
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN

NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.692 0.840
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN

NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.692 0.840
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH

DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.692 0.840
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA

TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.692 0.820
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN

NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.686 0.820
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH

DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.686 0.820
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN

NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.686 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra027177.1-P AP2 58 109

Links

Other AP2 family TFs
Other Brassica rapa TFs

401 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CG15696 Drosophila melanogaster FBgn0038833 D 0.000
MDOA010523 Musca domestica MDOA010523 I 0.000
AARA001486 Anopheles arabiensis AARA001486 I 0.000
AALB003384 Anopheles albimanus AALB003384 I 0.000
SNAPOd2T00022909001 Oikopleura dioica SNAPOd2T00022909001 I 0.000
LCUP001362 Lucilia cuprina LCUP001362 I 0.000
Sakowv30044194m.g Saccoglossus kowalevskii Sakowv30044194m.g I 0.000
gw.578.81.1 Branchiostoma floridae gw.578.81.1 I 0.000
fgenesh2_pg.scaffold_63000032 Branchiostoma floridae fgenesh2_pg.scaffold_63000032 I 0.000
fgenesh2_pg.scaffold_10000067 Branchiostoma floridae fgenesh2_pg.scaffold_10000067 I 0.000
YQE_12606 Dendroctonus ponderosae YQE_12606 I 0.000
TC015928 Tribolium castaneum TC015928 I 0.000
ACOM028352 Anopheles coluzzii ACOM028352 I 0.000
ACUA003130 Anopheles culicifacies ACUA003130 I 0.000
ADIR008273 Anopheles dirus ADIR008273 I 0.000
LLOJ009601 Lutzomyia longipalpis LLOJ009601 I 0.000
ASTEI03376 Anopheles stephensi ASTEI03376 I 0.000
ASIS007877 Anopheles sinensis ASIS007877 I 0.000
AQUA010265 Anopheles quadriannulatus AQUA010265 I 0.000
AMIN003870 Anopheles minimus AMIN003870 I 0.000
AMEM013111 Anopheles merus AMEM013111 I 0.000
AMEC009026 Anopheles melas AMEC009026 I 0.000
AFUN002303 Anopheles funestus AFUN002303 I 0.000
AFAF007403 Anopheles farauti AFAF007403 I 0.000
AEPI009779 Anopheles epiroticus AEPI009779 I 0.000
SPU_020565 Strongylocentrotus purpuratus SPU_020565 I 0.000
GA13896 Drosophila pseudoobscura FBgn0073928 I 0.000
GF17994 Drosophila ananassae FBgn0095012 I 0.000
GG24188 Drosophila erecta FBgn0085045 I 0.000
GE25692 Drosophila yakuba FBgn0084486 I 0.000
CPIJ003723 Culex quinquefasciatus CPIJ003723 I 0.000
CapteG70959 Capitella teleta CapteG70959 I 0.000
AGAP003406 Anopheles gambiae AGAP003406 I 0.000
ADAC003085 Anopheles darlingi ADAC003085 I 0.000
AAEL003158 Aedes aegypti AAEL003158 I 0.000
CpipJ_CPIJ003723 Culex pipiens CpipJ_CPIJ003723 I 0.000
AMSG_08218 Thecamonas trahens AMSG_08218 I 0.000
GH15916 Drosophila grimshawi FBgn0123387 I 0.000
GI10602 Drosophila mojavensis FBgn0133366 I 0.000
GL24283 Drosophila persimilis FBgn0161873 I 0.000
GM23140 Drosophila sechellia FBgn0178008 I 0.000
GJ22956 Drosophila virilis FBgn0210059 I 0.000
GK22474 Drosophila willistoni FBgn0224451 I 0.000
NEMVEDRAFT_v1g80927 Nematostella vectensis NEMVEDRAFT_v1g80927 I 0.000
MESCA004778 Megaselia scalaris MESCA004778 I 0.000
MCINX015546 Melitaea cinxia MCINX015546 I 0.000
LotgiG80572 Lottia gigantea LotgiG80572 I 0.000
LotgiG219968 Lottia gigantea LotgiG219968 I 0.000
HmN_000016500 Hymenolepis microstoma HmN_000016500 N 0.000
TASK_0000056701 Taenia asiatica TASK_0000056701 N 0.000
SSLN_0000254701 Schistocephalus solidus SSLN_0000254701 N 0.000
HNAJ_0001194801 Hymenolepis nana HNAJ_0001194801 N 0.000
HDID_0000204801 Hymenolepis diminuta HDID_0000204801 N 0.000
EmuJ_000101200 Echinococcus multilocularis EmuJ_000101200 N 0.000
ECANG7_00675 Echinococcus canadensis ECANG7_00675 N 0.000
BGIBMGA005045 Bombyx mori BGIBMGA005045 N 0.000
SMAR013779 Strigamia maritima SMAR013779 N 0.000
HMEL009910 Heliconius melpomene HMEL009910 N 0.000
KGM_09142 Danaus plexippus KGM_09142 N 0.000
TTAC_0000784501 Hydatigera taeniaeformis TTAC_0000784501 N 0.000