CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra027177
(
Brassica rapa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bra027177
T001177_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.787
0.960
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.787
0.960
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA
TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.742
0.840
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.742
0.840
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.742
0.840
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.742
0.860
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.742
0.860
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.733
0.840
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.733
0.840
Q8LKX0_MAIZE
M09722_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.706
0.840
Q5MAR7_BRANA
M09742_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.701
0.840
Q3HS44_BRANA
M09741_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.701
0.840
Q3HS43_BRANA
M09740_2.00
Brassica napus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.701
0.840
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.692
0.840
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.692
0.840
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.692
0.840
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.692
0.820
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN
NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.686
0.820
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH
DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.686
0.820
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN
NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.686
0.820
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra027177.1-P
AP2
58
109
PVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFATADMAARAHDVAALAIKGS
Links
Other
AP2
family TFs
Other
Brassica rapa
TFs
401 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CG15696
Drosophila melanogaster
FBgn0038833
D
0.000
MDOA010523
Musca domestica
MDOA010523
I
0.000
AARA001486
Anopheles arabiensis
AARA001486
I
0.000
AALB003384
Anopheles albimanus
AALB003384
I
0.000
SNAPOd2T00022909001
Oikopleura dioica
SNAPOd2T00022909001
I
0.000
LCUP001362
Lucilia cuprina
LCUP001362
I
0.000
Sakowv30044194m.g
Saccoglossus kowalevskii
Sakowv30044194m.g
I
0.000
gw.578.81.1
Branchiostoma floridae
gw.578.81.1
I
0.000
fgenesh2_pg.scaffold_63000032
Branchiostoma floridae
fgenesh2_pg.scaffold_63000032
I
0.000
fgenesh2_pg.scaffold_10000067
Branchiostoma floridae
fgenesh2_pg.scaffold_10000067
I
0.000
YQE_12606
Dendroctonus ponderosae
YQE_12606
I
0.000
TC015928
Tribolium castaneum
TC015928
I
0.000
ACOM028352
Anopheles coluzzii
ACOM028352
I
0.000
ACUA003130
Anopheles culicifacies
ACUA003130
I
0.000
ADIR008273
Anopheles dirus
ADIR008273
I
0.000
LLOJ009601
Lutzomyia longipalpis
LLOJ009601
I
0.000
ASTEI03376
Anopheles stephensi
ASTEI03376
I
0.000
ASIS007877
Anopheles sinensis
ASIS007877
I
0.000
AQUA010265
Anopheles quadriannulatus
AQUA010265
I
0.000
AMIN003870
Anopheles minimus
AMIN003870
I
0.000
AMEM013111
Anopheles merus
AMEM013111
I
0.000
AMEC009026
Anopheles melas
AMEC009026
I
0.000
AFUN002303
Anopheles funestus
AFUN002303
I
0.000
AFAF007403
Anopheles farauti
AFAF007403
I
0.000
AEPI009779
Anopheles epiroticus
AEPI009779
I
0.000
SPU_020565
Strongylocentrotus purpuratus
SPU_020565
I
0.000
GA13896
Drosophila pseudoobscura
FBgn0073928
I
0.000
GF17994
Drosophila ananassae
FBgn0095012
I
0.000
GG24188
Drosophila erecta
FBgn0085045
I
0.000
GE25692
Drosophila yakuba
FBgn0084486
I
0.000
CPIJ003723
Culex quinquefasciatus
CPIJ003723
I
0.000
CapteG70959
Capitella teleta
CapteG70959
I
0.000
AGAP003406
Anopheles gambiae
AGAP003406
I
0.000
ADAC003085
Anopheles darlingi
ADAC003085
I
0.000
AAEL003158
Aedes aegypti
AAEL003158
I
0.000
CpipJ_CPIJ003723
Culex pipiens
CpipJ_CPIJ003723
I
0.000
AMSG_08218
Thecamonas trahens
AMSG_08218
I
0.000
GH15916
Drosophila grimshawi
FBgn0123387
I
0.000
GI10602
Drosophila mojavensis
FBgn0133366
I
0.000
GL24283
Drosophila persimilis
FBgn0161873
I
0.000
GM23140
Drosophila sechellia
FBgn0178008
I
0.000
GJ22956
Drosophila virilis
FBgn0210059
I
0.000
GK22474
Drosophila willistoni
FBgn0224451
I
0.000
NEMVEDRAFT_v1g80927
Nematostella vectensis
NEMVEDRAFT_v1g80927
I
0.000
MESCA004778
Megaselia scalaris
MESCA004778
I
0.000
MCINX015546
Melitaea cinxia
MCINX015546
I
0.000
LotgiG80572
Lottia gigantea
LotgiG80572
I
0.000
LotgiG219968
Lottia gigantea
LotgiG219968
I
0.000
HmN_000016500
Hymenolepis microstoma
HmN_000016500
N
0.000
TASK_0000056701
Taenia asiatica
TASK_0000056701
N
0.000
SSLN_0000254701
Schistocephalus solidus
SSLN_0000254701
N
0.000
HNAJ_0001194801
Hymenolepis nana
HNAJ_0001194801
N
0.000
HDID_0000204801
Hymenolepis diminuta
HDID_0000204801
N
0.000
EmuJ_000101200
Echinococcus multilocularis
EmuJ_000101200
N
0.000
ECANG7_00675
Echinococcus canadensis
ECANG7_00675
N
0.000
BGIBMGA005045
Bombyx mori
BGIBMGA005045
N
0.000
SMAR013779
Strigamia maritima
SMAR013779
N
0.000
HMEL009910
Heliconius melpomene
HMEL009910
N
0.000
KGM_09142
Danaus plexippus
KGM_09142
N
0.000
TTAC_0000784501
Hydatigera taeniaeformis
TTAC_0000784501
N
0.000