Bra027615 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra027615 T001183_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G63040
M06590_2.00 		Arabidopsis thaliana
TTGAAA
TTTCAA		 Dap-seq
OMalley et al.(2016)
AT1G63040_col_a 		0.741 0.980
ERF027
M06566_2.00 		Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_col_a 		0.704 0.878
ERF027
M06567_2.00 		Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN		 Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a 		0.704 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra027615.1-P AP2 85 135

Links

Other AP2 family TFs
Other Brassica rapa TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra027616 Brassica rapa Bra027616 I 0.757
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.747
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.747
Bo9g028820 Brassica oleracea Bo9g028820 I 0.742
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.741
Bo9g036590 Brassica oleracea Bo9g036590 I 0.736
30147.m014311 Ricinus communis 30147.m014311 I 0.736
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.732
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.732
TCM_016176 Theobroma cacao TCM_016176 I 0.732
Carubv10012147m.g Capsella rubella Carubv10012147m.g I 0.726
Cla011673 Citrullus lanatus Cla011673 I 0.726
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.726
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.725
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.725
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.722
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.721
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.721
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.720
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.720
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.718
ERF027 Arabidopsis thaliana AT1G12630 D 0.704
MDP0000189347 Malus domestica MDP0000189347 I 0.704
Cla004491 Citrullus lanatus Cla004491 I 0.699
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.696
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I 0.693
Bo8g064940 Brassica oleracea Bo8g064940 I 0.680
Bra016761 Brassica rapa Bra016761 I 0.680
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I 0.677