CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra027615
(
Brassica rapa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bra027615
T001183_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA
TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.741
0.980
ERF027
M06566_2.00
Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN
Dap-seq
OMalley et al.(2016)
AT1G12630_col_a
0.704
0.878
ERF027
M06567_2.00
Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN
Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a
0.704
0.878
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra027615.1-P
AP2
85
135
PVYRGIRCRSGKWVSEIREPKKTTRVWLGTYSTPEMAAAAYDVAALALKGG
Links
Other
AP2
family TFs
Other
Brassica rapa
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA037592
Oryza indica
BGIOSGA037592
I
0.000
BRADI4G04720
Brachypodium distachyon
BRADI4G04720
I
0.000
F775_30589
Aegilops tauschii
F775_30589
I
0.000
GRMZM2G479885
Zea mays
GRMZM2G479885
D
0.000
GSMUA_Achr11G25310_001
Musa acuminata
GSMUA_Achr11G25310_001
N
0.000
LPERR12G12950
Leersia perrieri
LPERR12G12950
I
0.000
MLOC_51930
Hordeum vulgare
MLOC_51930
I
0.000
OBART12G15770
Oryza barthii
OBART12G15770
I
0.000
OGLUM12G17310
Oryza glumaepatula
OGLUM12G17310
I
0.000
OMERI02G09390
Oryza meridionalis
OMERI02G09390
I
0.000
ONIVA12G14510
Oryza nivara
ONIVA12G14510
I
0.000
OPUNC12G14150
Oryza punctata
OPUNC12G14150
I
0.000
ORGLA11G0215100
Oryza glaberrima
ORGLA11G0215100
I
0.000
ORGLA12G0138000
Oryza glaberrima
ORGLA12G0138000
I
0.000
ORUFI12G17520
Oryza rufipogon
ORUFI12G17520
I
0.000
Pavir.Ca02565
Panicum virgatum
Pavir.Ca02565
I
0.000
Pavir.Cb00560
Panicum virgatum
Pavir.Cb00560
I
0.000
Sb08g018170
Sorghum bicolor
Sb08g018170
I
0.000
Si023541m.g
Setaria italica
Si023541m.g
I
0.000
Traes_5BS_FF44610EF1
Triticum aestivum
Traes_5BS_FF44610EF1
I
0.000
Traes_5DS_011851EE7
Triticum aestivum
Traes_5DS_011851EE7
I
0.000