CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra027616
(
Brassica rapa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bra027616
T001184_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA
TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.741
0.980
ERF027
M06566_2.00
Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN
Dap-seq
OMalley et al.(2016)
AT1G12630_col_a
0.704
0.878
ERF027
M06567_2.00
Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN
Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a
0.704
0.878
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra027616.1-P
AP2
85
135
PVYRGIRCRSGKWVSEIREPKKTTRVWLGTYSTPEMAAAAYDVAALALKGG
Links
Other
AP2
family TFs
Other
Brassica rapa
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra027615
Brassica rapa
Bra027615
I
0.757
Al_scaffold_0240_1
Arabidopsis lyrata
Al_scaffold_0240_1
I
0.747
Al_scaffold_0002_210
Arabidopsis lyrata
Al_scaffold_0002_210
I
0.747
Bo9g028820
Brassica oleracea
Bo9g028820
I
0.742
AT1G63040
Arabidopsis thaliana
AT1G63040
D
0.741
Bo9g036590
Brassica oleracea
Bo9g036590
I
0.736
30147.m014311
Ricinus communis
30147.m014311
I
0.736
Cagra.6357s0007
Capsella grandiflora
Cagra.6357s0007
I
0.732
Carubv10022214m.g
Capsella rubella
Carubv10022214m.g
I
0.732
TCM_016176
Theobroma cacao
TCM_016176
I
0.732
Carubv10012147m.g
Capsella rubella
Carubv10012147m.g
I
0.726
Cla011673
Citrullus lanatus
Cla011673
I
0.726
Thhalv10009659m.g
Eutrema salsugineum
Thhalv10009659m.g
I
0.726
PGSC0003DMG400022759
Solanum tuberosum
PGSC0003DMG400022759
I
0.725
Solyc08g080290.2
Solanum lycopersicum
Solyc08g080290.2
I
0.725
Aquca_013_00433
Aquilegia coerulea
Aquca_013_00433
I
0.722
Cucsa.302760
Cucumis sativus
Cucsa.302760
I
0.721
Cagra.0568s0175
Capsella grandiflora
Cagra.0568s0175
I
0.721
scaffold_101390.1
Arabidopsis lyrata
scaffold_101390.1
I
0.720
fgenesh1_pm.C_scaffold_1001063
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1001063
I
0.720
Bostr.13671s0198
Boechera stricta
Bostr.13671s0198
I
0.718
ERF027
Arabidopsis thaliana
AT1G12630
D
0.704
MDP0000189347
Malus domestica
MDP0000189347
I
0.704
Cla004491
Citrullus lanatus
Cla004491
I
0.699
Gorai.003G162600
Gossypium raimondii
Gorai.003G162600
I
0.696
Thhalv10023678m.g
Eutrema salsugineum
Thhalv10023678m.g
I
0.693
Bo8g064940
Brassica oleracea
Bo8g064940
I
0.680
Bra016761
Brassica rapa
Bra016761
I
0.680
PGSC0003DMG400012527
Solanum tuberosum
PGSC0003DMG400012527
I
0.677