Bra028009 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra028009 T001187_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.703 0.780
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.703 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028009.1-P AP2 18 69

Links

Other AP2 family TFs
Other Brassica rapa TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g046850 Brassica oleracea Bo6g046850 I 0.814
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.807
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.800
Bo8g027240 Brassica oleracea Bo8g027240 I 0.794
ERF022 Arabidopsis thaliana AT1G33760 I 0.788
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.780
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.777
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.767
Bra010210 Brassica rapa Bra010210 I 0.765
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.758
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.755
TCM_036269 Theobroma cacao TCM_036269 I 0.752
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.750
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.750
Bo5g086680 Brassica oleracea Bo5g086680 I 0.750
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.749
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.744
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.742
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.742
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.741
28118.m000034 Ricinus communis 28118.m000034 I 0.740
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.740
Cla012665 Citrullus lanatus Cla012665 I 0.739
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.737
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.735
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.734
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.734
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.734
TCM_036270 Theobroma cacao TCM_036270 I 0.734
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.734
Pm004269 Prunus mume Pm004269 I 0.734
Pm004272 Prunus mume Pm004272 I 0.733
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.733
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.733
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.733
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.733
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.733
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.731
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.730
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.730
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.728
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.726
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.726
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.725
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.725
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.724
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.724
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.724
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.724
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.724
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.721
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.721
MDP0000122739 Malus domestica MDP0000122739 I 0.721
MDP0000122740 Malus domestica MDP0000122740 I 0.721
MDP0000151428 Malus domestica MDP0000151428 I 0.721
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.720
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.719
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.719
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.719
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.719
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.718
MDP0000283350 Malus domestica MDP0000283350 I 0.715
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.715
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.714
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.713
Cla012661 Citrullus lanatus Cla012661 I 0.709
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.709
Bra007975 Brassica rapa Bra007975 I 0.707
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.706
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.703
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.703
ERF021 Arabidopsis thaliana AT1G71450 D 0.703
Bo2g072910 Brassica oleracea Bo2g072910 I 0.703
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.703
27805.m000021 Ricinus communis 27805.m000021 I 0.703
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.703
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.701
Si026882m.g Setaria italica Si026882m.g I 0.700
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.699
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.699
OB11G16300 Oryza brachyantha OB11G16300 I 0.695
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.694
Bra016136 Brassica rapa Bra016136 I 0.693
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.692
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.691
Ca_15064 Cicer arietinum Ca_15064 I 0.691
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.690
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.690
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.690
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.690
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.690
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.690
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.690
OS11G0242300 Oryza sativa OS11G0242300 I 0.690
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.690
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.690
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.690
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.690
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.687
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.687
Bo6g113020 Brassica oleracea Bo6g113020 I 0.686
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.685
F775_17299 Aegilops tauschii F775_17299 I 0.685
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.685
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.685
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.685
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.685
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.684
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.680
LPERR04G10650 Leersia perrieri LPERR04G10650 N 0.679
ORGLA04G0108200 Oryza glaberrima ORGLA04G0108200 N 0.679
ORUFI04G15010 Oryza rufipogon ORUFI04G15010 N 0.679
ONIVA04G11950 Oryza nivara ONIVA04G11950 N 0.679
OMERI04G12360 Oryza meridionalis OMERI04G12360 N 0.679