Bra034159 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra034159 T001223_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.746 0.880
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.746 0.880
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.679 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra034159.1-P AP2 72 123

Links

Other AP2 family TFs
Other Brassica rapa TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g141310 Brassica oleracea Bo1g141310 I 0.805
Bra001386 Brassica rapa Bra001386 I 0.800
Bo3g063910 Brassica oleracea Bo3g063910 I 0.799
Bo5g136930 Brassica oleracea Bo5g136930 I 0.774
Bra029889 Brassica rapa Bra029889 I 0.774
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.758
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.756
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.752
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.752
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.752
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.752
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.752
DREB2A Arabidopsis thaliana AT5G05410 D 0.746
Bo2g006960 Brassica oleracea Bo2g006960 I 0.745
Bra028759 Brassica rapa Bra028759 I 0.745
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.743
Bra005852 Brassica rapa Bra005852 I 0.740
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.734
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.690
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.687
F775_32062 Aegilops tauschii F775_32062 I 0.687
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.687
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.687
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.685
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.684
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.681
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.681
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.681
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.680
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.679
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.679
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.679
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.679
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.677