CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra036360
(
Brassica rapa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Bra036360
T001237_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF119
M01093_2.00
Arabidopsis thaliana
NNNGCCGNN
NNCGGCNNN
PBM
Lambert et al.(2019)
pTH11551
0.782
0.902
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.714
0.765
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.714
0.765
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.714
0.765
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra036360.1-P
AP2
110
161
RKPVGVRQRKWGKWAAEIRHPITKIRTWLGTYDTLEQAADAYAAKKLEFDAL
Links
Other
AP2
family TFs
Other
Brassica rapa
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ERF119
Arabidopsis thaliana
AT3G25890
D
0.782
Cagra.6197s0021
Capsella grandiflora
Cagra.6197s0021
I
0.781
scaffold_500470.1
Arabidopsis lyrata
scaffold_500470.1
I
0.781
Carubv10017565m.g
Capsella rubella
Carubv10017565m.g
I
0.777
Bra025170
Brassica rapa
Bra025170
I
0.774
Bo7g082250
Brassica oleracea
Bo7g082250
I
0.774
Thhalv10004526m.g
Eutrema salsugineum
Thhalv10004526m.g
I
0.774
Bostr.0556s0264
Boechera stricta
Bostr.0556s0264
I
0.761
Bo2g138790
Brassica oleracea
Bo2g138790
I
0.750
Bostr.26959s0035
Boechera stricta
Bostr.26959s0035
I
0.738
fgenesh2_kg.2__1107__AT1G68550.2
Arabidopsis lyrata
fgenesh2_kg.2__1107__AT1G68550.2
I
0.730
Gorai.008G183300
Gossypium raimondii
Gorai.008G183300
I
0.720
TCM_011811
Theobroma cacao
TCM_011811
I
0.720
evm.TU.supercontig_1.178
Carica papaya
evm.TU.supercontig_1.178
I
0.715
ERF118
Arabidopsis thaliana
AT1G68550
D
0.714
Thhalv10019722m.g
Eutrema salsugineum
Thhalv10019722m.g
I
0.713
Bra004033
Brassica rapa
Bra004033
N
0.692
Bo6g096060
Brassica oleracea
Bo6g096060
N
0.692