Bra037124 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra037124 T001242_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.819 0.980
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.819 0.980
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.818 0.940
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.817 0.940
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.817 0.940
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.808 0.920
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.808 0.920
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.808 0.920
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.808 0.920
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.763 0.880
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.763 0.880
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.730 0.860
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.730 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037124.1-P AP2 20 71

Links

Other AP2 family TFs
Other Brassica rapa TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28718.m000038 Ricinus communis 28718.m000038 I 0.803
30170.m013843 Ricinus communis 30170.m013843 I 0.794
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.691
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.796
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.794
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.730
ERF008 Arabidopsis thaliana AT2G23340 D 0.808
ERF011 Arabidopsis thaliana AT3G50260 D 0.817
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.763
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.818
ERF010 Arabidopsis thaliana AT5G67190 D 0.819
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.756
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.756
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.757
Bo1g004940 Brassica oleracea Bo1g004940 I 0.808
Bo4g151460 Brassica oleracea Bo4g151460 I 0.818
Bo7g063980 Brassica oleracea Bo7g063980 I 0.819
Bo7g118430 Brassica oleracea Bo7g118430 I 0.818
Bo8g079660 Brassica oleracea Bo8g079660 I 0.819
Bo9g020380 Brassica oleracea Bo9g020380 I 0.827
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.819
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.775
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.818
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.726
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.781
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.818
Bra011744 Brassica rapa Bra011744 I 0.783
Bra012140 Brassica rapa Bra012140 I 0.798
Bra014056 Brassica rapa Bra014056 I 0.786
Bra017811 Brassica rapa Bra017811 I 0.818
Bra032173 Brassica rapa Bra032173 I 0.818
Bra036061 Brassica rapa Bra036061 I 0.819
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.757
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.756
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.819
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.817
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.775
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.818
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.818
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.818
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.775
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.817
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.818
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.819
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.780
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.794
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.794
Ca_01556 Cicer arietinum Ca_01556 I 0.733
Ca_02170 Cicer arietinum Ca_02170 I 0.775
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.792
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.805
Cla014175 Citrullus lanatus Cla014175 I 0.759
Cla020550 Citrullus lanatus Cla020550 I 0.741
Cla020961 Citrullus lanatus Cla020961 I 0.786
Cla022937 Citrullus lanatus Cla022937 I 0.784
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.759
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.786
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.741
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.784
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.784
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.786
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.786
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.805
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.818
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.817
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.763
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.794
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.804
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.777
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.774
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.774
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.774
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.777
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.786
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.762
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.786
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.805
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.773
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.805
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.786
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.773
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.725
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.756
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.748
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.756
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.784
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.766
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.760
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.728
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.725
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.742
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.727
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.778
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.772
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.777
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.735
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.764
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.756
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.757
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.751
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.796
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.794
MDP0000125673 Malus domestica MDP0000125673 I 0.804
MDP0000179962 Malus domestica MDP0000179962 I 0.804
MDP0000756341 Malus domestica MDP0000756341 I 0.761
mgf000289m Mimulus guttatus mgf000289m I 0.781
mgf006561m Mimulus guttatus mgf006561m I 0.802
mgf021115m Mimulus guttatus mgf021115m I 0.794
mgf025363m Mimulus guttatus mgf025363m I 0.769
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.755
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.774
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.733
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.775
OBART06G04460 Oryza barthii OBART06G04460 I 0.757
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.756
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.757
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.756
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.756
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.757
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.757
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.805
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.792
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.756
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.757
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.757
OS04G0648900 Oryza sativa OS04G0648900 I 0.756
OS06G0166400 Oryza sativa OS06G0166400 I 0.757
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.756
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.757
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.756
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.757
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.795
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.781
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.760
PK15612.1 Cannabis sativa PK15612.1 I 0.777
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.794
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.780
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.780
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.794
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.761
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.802
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.796
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.794
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.780
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.765
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.765
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.794
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.756
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.757
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.732
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.818
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.819
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.781
TCM_000669 Theobroma cacao TCM_000669 I 0.805
TCM_033791 Theobroma cacao TCM_033791 I 0.784
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.776
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.819
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.818
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.756
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.755
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.763
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.770