CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
BRADI1G33550
(
Brachypodium distachyon
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
BRADI1G33550
T001264_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.742
0.840
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.742
0.840
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.742
0.840
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC
GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.679
0.820
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.679
0.820
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.679
0.820
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G33550.1
AP2
19
70
IRYRGVRKRPSGRYAAEIRDPTKKTPIWLGTFDSAEDAARAYDTAARNLRGP
Links
Other
AP2
family TFs
Other
Brachypodium distachyon
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRADI3G04410
Brachypodium distachyon
BRADI3G04410
I
0.762
Thhalv10021393m.g
Eutrema salsugineum
Thhalv10021393m.g
I
0.746
GLYMA14G02360
Glycine max
GLYMA14G02360
I
0.746
ERF7
Arabidopsis thaliana
AT3G20310
D
0.742
Gorai.007G312200
Gossypium raimondii
Gorai.007G312200
I
0.739
Bra018864
Brassica rapa
Bra018864
I
0.733
GLYMA02G46340
Glycine max
GLYMA02G46340
I
0.729
GRMZM2G079653
Zea mays
GRMZM2G079653
I
0.726
Pavir.Ab00660
Panicum virgatum
Pavir.Ab00660
I
0.725
Sb04g006080
Sorghum bicolor
Sb04g006080
I
0.725
GRMZM2G146028
Zea mays
GRMZM2G146028
I
0.725
BRADI3G06562
Brachypodium distachyon
BRADI3G06562
I
0.725
Pavir.Aa03102
Panicum virgatum
Pavir.Aa03102
I
0.725
OPUNC02G05940
Oryza punctata
OPUNC02G05940
I
0.724
LPERR02G05920
Leersia perrieri
LPERR02G05920
I
0.724
PGSC0003DMG400000681
Solanum tuberosum
PGSC0003DMG400000681
I
0.721
GLYMA06G44430
Glycine max
GLYMA06G44430
I
0.717
GLYMA12G13315
Glycine max
GLYMA12G13315
I
0.717
cassava34729.m1
Manihot esculenta
cassava34729.m1
I
0.716
ORUFI02G06880
Oryza rufipogon
ORUFI02G06880
I
0.715
LPERR06G21240
Leersia perrieri
LPERR06G21240
N
0.715
ORGLA02G0063000
Oryza glaberrima
ORGLA02G0063000
I
0.715
OGLUM02G06860
Oryza glumaepatula
OGLUM02G06860
I
0.715
OMERI02G07840
Oryza meridionalis
OMERI02G07840
I
0.715
Solyc07g049490.1
Solanum lycopersicum
Solyc07g049490.1
I
0.712
Carubv10014475m.g
Capsella rubella
Carubv10014475m.g
I
0.712
Cagra.0316s0033
Capsella grandiflora
Cagra.0316s0033
I
0.712
gene03450-v1.0-hybrid
Fragaria vesca
gene03450-v1.0-hybrid
I
0.704
Bostr.19424s0625
Boechera stricta
Bostr.19424s0625
I
0.703
ONIVA06G28540
Oryza nivara
ONIVA06G28540
N
0.702
OPUNC06G23160
Oryza punctata
OPUNC06G23160
N
0.702
OS06G0691100
Oryza sativa
OS06G0691100
N
0.702
ORUFI06G27450
Oryza rufipogon
ORUFI06G27450
N
0.702
OGLUM06G26910
Oryza glumaepatula
OGLUM06G26910
N
0.702
OMERI06G25700
Oryza meridionalis
OMERI06G25700
N
0.702
OBART06G25530
Oryza barthii
OBART06G25530
N
0.702
Bo3g074840
Brassica oleracea
Bo3g074840
I
0.701
Bra001784
Brassica rapa
Bra001784
I
0.701
Gorai.013G169500
Gossypium raimondii
Gorai.013G169500
I
0.699
Ca_20544
Cicer arietinum
Ca_20544
I
0.699
ATERF-7
Arabidopsis lyrata
fgenesh2_kg.3__2255__AT3G20310.1
I
0.696
Pavir.Db00303
Panicum virgatum
Pavir.Db00303
N
0.694
GRMZM2G175543
Zea mays
GRMZM2G175543
N
0.694
Bostr.26675s0388
Boechera stricta
Bostr.26675s0388
I
0.686
ONIVA02G04420
Oryza nivara
ONIVA02G04420
N
0.685
Bo5g109800
Brassica oleracea
Bo5g109800
I
0.685
Bra035792
Brassica rapa
Bra035792
I
0.685
OGLUM02G04330
Oryza glumaepatula
OGLUM02G04330
N
0.685
ORGLA02G0040900
Oryza glaberrima
ORGLA02G0040900
N
0.685
LPERR02G03850
Leersia perrieri
LPERR02G03850
N
0.685
GLYMA18G10290
Glycine max
GLYMA18G10290
I
0.684
GLYMA08G43300
Glycine max
GLYMA08G43300
I
0.684
Sb10g028110
Sorghum bicolor
Sb10g028110
N
0.683
GSMUA_Achr3G13010_001
Musa acuminata
GSMUA_Achr3G13010_001
I
0.680
GRMZM2G020150
Zea mays
GRMZM2G020150
I
0.680
ATERF-4
Arabidopsis lyrata
scaffold_301765.1
I
0.679
ERF4
Arabidopsis thaliana
AT3G15210
D
0.679
Bo1g108970
Brassica oleracea
Bo1g108970
I
0.679
GRMZM2G174347
Zea mays
GRMZM2G174347
I
0.679
Bra038261
Brassica rapa
Bra038261
I
0.679
SELMODRAFT_17648
Selaginella moellendorffii
SELMODRAFT_17648
I
0.677
MTR_3g053690
Medicago truncatula
MTR_3g053690
I
0.677
SELMODRAFT_129122
Selaginella moellendorffii
SELMODRAFT_129122
I
0.677
Eucgr.K00734
Eucalyptus grandis
Eucgr.K00734
I
0.677