CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRADI3G12565
(
Brachypodium distachyon
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
BRADI3G12565
T001321_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.708
0.808
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.679
0.788
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI3G12565.1
AP2
11
63
TKYRGVRRRPSGKYAAEIRDSSRQSVRVWLGTFDTAEEAARAYDRSAYNMRGQ
Links
Other
AP2
family TFs
Other
Brachypodium distachyon
TFs
127 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G060206
Zea mays
GRMZM2G060206
I
0.811
F775_33015
Aegilops tauschii
F775_33015
I
0.806
OGLUM08G25360
Oryza glumaepatula
OGLUM08G25360
I
0.806
ORGLA08G0192600
Oryza glaberrima
ORGLA08G0192600
I
0.806
OB08G30700
Oryza brachyantha
OB08G30700
I
0.806
OPUNC08G21790
Oryza punctata
OPUNC08G21790
I
0.806
ONIVA09G01310
Oryza nivara
ONIVA09G01310
I
0.806
OLONG_010226
Oryza longistaminata
OLONG_010226
I
0.806
LPERR08G20550
Leersia perrieri
LPERR08G20550
I
0.806
OMERI08G18690
Oryza meridionalis
OMERI08G18690
I
0.806
OBART08G23880
Oryza barthii
OBART08G23880
I
0.806
ORUFI08G26360
Oryza rufipogon
ORUFI08G26360
I
0.806
BGIOSGA029205
Oryza indica
BGIOSGA029205
I
0.806
Si015487m.g
Setaria italica
Si015487m.g
I
0.806
BGIOSGA029206
Oryza indica
BGIOSGA029206
I
0.806
Pavir.Fb02184
Panicum virgatum
Pavir.Fb02184
I
0.806
Sb07g023803
Sorghum bicolor
Sb07g023803
I
0.806
Pavir.Fa00010
Panicum virgatum
Pavir.Fa00010
I
0.806
Si011941m.g
Setaria italica
Si011941m.g
I
0.803
Si040039m.g
Setaria italica
Si040039m.g
I
0.793
Cucsa.255320
Cucumis sativus
Cucsa.255320
I
0.727
Cla021852
Citrullus lanatus
Cla021852
I
0.727
GRMZM2G060517
Zea mays
GRMZM2G060517
I
0.725
Si032391m.g
Setaria italica
Si032391m.g
I
0.725
Pavir.Bb01308
Panicum virgatum
Pavir.Bb01308
I
0.725
OGLUM09G21140
Oryza glumaepatula
OGLUM09G21140
I
0.723
OPUNC09G18680
Oryza punctata
OPUNC09G18680
I
0.723
OS09G0571700
Oryza sativa
OS09G0571700
I
0.723
ORUFI09G22030
Oryza rufipogon
ORUFI09G22030
I
0.723
ORGLA09G0166700
Oryza glaberrima
ORGLA09G0166700
I
0.723
ONIVA01G39370
Oryza nivara
ONIVA01G39370
I
0.723
OLONG_005596
Oryza longistaminata
OLONG_005596
I
0.723
OBART09G20380
Oryza barthii
OBART09G20380
I
0.723
LPERR09G16370
Leersia perrieri
LPERR09G16370
I
0.723
BGIOSGA029230
Oryza indica
BGIOSGA029230
I
0.723
OB09G27120
Oryza brachyantha
OB09G27120
I
0.722
TRIUR3_22798
Triticum urartu
TRIUR3_22798
I
0.719
Traes_4DS_AB2BEFAB3
Triticum aestivum
Traes_4DS_AB2BEFAB3
I
0.719
F775_23071
Aegilops tauschii
F775_23071
I
0.719
Traes_4BS_180379032
Triticum aestivum
Traes_4BS_180379032
I
0.719
Traes_4AS_FA4BBDBF9
Triticum aestivum
Traes_4AS_FA4BBDBF9
I
0.719
Aquca_034_00377
Aquilegia coerulea
Aquca_034_00377
N
0.715
cassava41615.m1
Manihot esculenta
cassava41615.m1
I
0.715
Thhalv10003355m.g
Eutrema salsugineum
Thhalv10003355m.g
I
0.709
Bra027493
Brassica rapa
Bra027493
I
0.708
Solyc09g089910.1
Solanum lycopersicum
Solyc09g089910.1
I
0.708
PGSC0003DMG400017233
Solanum tuberosum
PGSC0003DMG400017233
I
0.708
Bostr.3148s0125
Boechera stricta
Bostr.3148s0125
I
0.708
scaffold_800707.1
Arabidopsis lyrata
scaffold_800707.1
I
0.708
ERF096
Arabidopsis thaliana
AT5G43410
D
0.708
Cagra.0244s0009
Capsella grandiflora
Cagra.0244s0009
I
0.708
Bo9g059180
Brassica oleracea
Bo9g059180
I
0.708
29603.m000510
Ricinus communis
29603.m000510
I
0.706
cassava38508.m1
Manihot esculenta
cassava38508.m1
I
0.706
GLYMA02G00890
Glycine max
GLYMA02G00890
I
0.703
Cla015064
Citrullus lanatus
Cla015064
I
0.703
Eucgr.H03090
Eucalyptus grandis
Eucgr.H03090
I
0.702
SapurV1A.0292s0010
Salix purpurea
SapurV1A.0292s0010
I
0.702
SapurV1A.0021s0990
Salix purpurea
SapurV1A.0021s0990
I
0.702
Traes_6BS_4C945B9F1
Triticum aestivum
Traes_6BS_4C945B9F1
I
0.701
Eucgr.H03091
Eucalyptus grandis
Eucgr.H03091
I
0.700
29584.m000237
Ricinus communis
29584.m000237
I
0.697
Ciclev10006784m.g
Citrus clementina
Ciclev10006784m.g
I
0.697
orange1.1g048608m.g
Citrus sinensis
orange1.1g048608m.g
I
0.697
POPTR_0010s08310
Populus trichocarpa
POPTR_0010s08310
I
0.697
F775_03520
Aegilops tauschii
F775_03520
I
0.697
Carubv10028227m.g
Capsella rubella
Carubv10028227m.g
I
0.695
Solyc11g006050.1
Solanum lycopersicum
Solyc11g006050.1
I
0.693
Aquca_067_00006
Aquilegia coerulea
Aquca_067_00006
I
0.693
LjSGA_028626.1
Lotus japonicus
LjSGA_028626.1
I
0.692
GLYMA10G33080
Glycine max
GLYMA10G33080
I
0.691
Gorai.006G249800
Gossypium raimondii
Gorai.006G249800
I
0.691
PGSC0003DMG400045092
Solanum tuberosum
PGSC0003DMG400045092
I
0.691
POPTR_0008s16600
Populus trichocarpa
POPTR_0008s16600
I
0.688
orange1.1g047241m.g
Citrus sinensis
orange1.1g047241m.g
I
0.688
Ciclev10007133m.g
Citrus clementina
Ciclev10007133m.g
I
0.688
cassava3323.m1
Manihot esculenta
cassava3323.m1
I
0.688
TCM_020870
Theobroma cacao
TCM_020870
I
0.686
GLYMA20G34550
Glycine max
GLYMA20G34550
I
0.686
mgf018935m
Mimulus guttatus
mgf018935m
I
0.685
gene08071-v1.0-hybrid
Fragaria vesca
gene08071-v1.0-hybrid
I
0.684
Gorai.005G049200
Gossypium raimondii
Gorai.005G049200
I
0.684
PGSC0003DMG400046646
Solanum tuberosum
PGSC0003DMG400046646
I
0.684
Bostr.26675s0318
Boechera stricta
Bostr.26675s0318
I
0.684
Cagra.1671s0052
Capsella grandiflora
Cagra.1671s0052
I
0.684
TCM_020869
Theobroma cacao
TCM_020869
I
0.684
Carubv10011057m.g
Capsella rubella
Carubv10011057m.g
I
0.684
Solyc09g089920.1
Solanum lycopersicum
Solyc09g089920.1
I
0.684
cassava631.valid.m1
Manihot esculenta
cassava631.valid.m1
I
0.684
SapurV1A.0007s0960
Salix purpurea
SapurV1A.0007s0960
I
0.684
ONIVA10G10810
Oryza nivara
ONIVA10G10810
I
0.683
Thhalv10009418m.g
Eutrema salsugineum
Thhalv10009418m.g
I
0.683
ORUFI10G12140
Oryza rufipogon
ORUFI10G12140
I
0.683
AMTR_s00009p00147970
Amborella trichopoda
AMTR_s00009p00147970
I
0.683
OPUNC10G09910
Oryza punctata
OPUNC10G09910
I
0.683
ORGLA10G0102500
Oryza glaberrima
ORGLA10G0102500
I
0.683
OGLUM10G11380
Oryza glumaepatula
OGLUM10G11380
I
0.683
OBART10G11630
Oryza barthii
OBART10G11630
I
0.683
BGIOSGA031822
Oryza indica
BGIOSGA031822
I
0.683
VIT_07s0005g03210
Vitis vinifera
VIT_07s0005g03210
I
0.682
AMTR_s00021p00185480
Amborella trichopoda
AMTR_s00021p00185480
I
0.682
Cucsa.383680
Cucumis sativus
Cucsa.383680
I
0.682
SapurV1A.0006s0870
Salix purpurea
SapurV1A.0006s0870
I
0.681
GSMUA_Achr1G15350_001
Musa acuminata
GSMUA_Achr1G15350_001
I
0.681
BGIOSGA015474
Oryza indica
BGIOSGA015474
I
0.680
OS04G0257500
Oryza sativa
OS04G0257500
I
0.680
ORUFI04G06330
Oryza rufipogon
ORUFI04G06330
I
0.680
OLONG_027600
Oryza longistaminata
OLONG_027600
I
0.680
ORGLA04G0041100
Oryza glaberrima
ORGLA04G0041100
I
0.680
OGLUM04G04620
Oryza glumaepatula
OGLUM04G04620
I
0.680
ONIVA04G03680
Oryza nivara
ONIVA04G03680
I
0.680
OBART04G05450
Oryza barthii
OBART04G05450
I
0.680
OB04G14270
Oryza brachyantha
OB04G14270
I
0.680
ATERF14
Arabidopsis lyrata
scaffold_100393.1
I
0.680
AMTR_s00009p00148470
Amborella trichopoda
AMTR_s00009p00148470
I
0.679
ERF14
Arabidopsis thaliana
AT1G04370
D
0.679
cassava38545.m1
Manihot esculenta
cassava38545.m1
I
0.679
Bo5g004520
Brassica oleracea
Bo5g004520
I
0.679
LPERR04G03550
Leersia perrieri
LPERR04G03550
I
0.679
Lus10011831.g
Linum usitatissimum
Lus10011831.g
I
0.679
Bra015310
Brassica rapa
Bra015310
I
0.679
POPTR_0004s05100
Populus trichocarpa
POPTR_0004s05100
I
0.678
Eucgr.B01537
Eucalyptus grandis
Eucgr.B01537
I
0.678
SapurV1A.0012s0890
Salix purpurea
SapurV1A.0012s0890
I
0.678
VIT_07s0005g03200
Vitis vinifera
VIT_07s0005g03200
I
0.678
Lus10011830.g
Linum usitatissimum
Lus10011830.g
I
0.677
Ca_12218
Cicer arietinum
Ca_12218
I
0.677