CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRADI3G51630
(
Brachypodium distachyon
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
BRADI3G51630
T001346_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN
NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.842
0.960
DREB1G
M09707_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.842
0.960
DREB1E
M09709_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.793
0.920
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.755
0.820
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.755
0.820
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.755
0.820
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.755
0.820
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT
ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.720
0.760
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.720
0.760
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.720
0.760
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.719
0.800
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.719
0.800
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.689
0.720
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.689
0.720
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.689
0.720
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.689
0.720
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.689
0.720
DREB1F
M09701_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.689
0.720
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI3G51630.1
AP2
54
105
PVLKGVRRRNPGRWVCEVREPHSKQRIWLGTFETAEMAARAHDVAALALRGR
Links
Other
AP2
family TFs
Other
Brachypodium distachyon
TFs
151 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_00940
Aegilops tauschii
F775_00940
N
0.000
BRADI2G11260
Brachypodium distachyon
BRADI2G11260
N
0.000
MLOC_71056
Hordeum vulgare
MLOC_71056
N
0.000
LPERR01G11210
Leersia perrieri
LPERR01G11210
N
0.000
OBART01G12290
Oryza barthii
OBART01G12290
N
0.000
OB01G22030
Oryza brachyantha
OB01G22030
N
0.000
ORGLA01G0103700
Oryza glaberrima
ORGLA01G0103700
N
0.000
OGLUM01G13750
Oryza glumaepatula
OGLUM01G13750
N
0.000
ONIVA01G14500
Oryza nivara
ONIVA01G14500
N
0.000
OPUNC01G11990
Oryza punctata
OPUNC01G11990
N
0.000
ORUFI01G13250
Oryza rufipogon
ORUFI01G13250
N
0.000
TIP2
Oryza sativa
OS01G0293100
N
0.000
Pavir.Ea01473
Panicum virgatum
Pavir.Ea01473
N
0.000
Pavir.Eb01270
Panicum virgatum
Pavir.Eb01270
N
0.000
Sb03g011940
Sorghum bicolor
Sb03g011940
N
0.000
TRIUR3_32308
Triticum urartu
TRIUR3_32308
N
0.000
GRMZM2G021276
Zea mays
GRMZM2G021276
N
0.000