BRADI3G51630 (Brachypodium distachyon)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 BRADI3G51630 T001346_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.842 0.960
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.842 0.960
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.793 0.920
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.755 0.820
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.755 0.820
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.755 0.820
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.755 0.820
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.720 0.760
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.720 0.760
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.720 0.760
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.719 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.719 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.689 0.720
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.689 0.720
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.689 0.720
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.689 0.720
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.689 0.720
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.689 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G51630.1 AP2 54 105

Links

Other AP2 family TFs
Other Brachypodium distachyon TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.713
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.707
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.705
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.749
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.689
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.719
DREB1F Arabidopsis thaliana AT1G12610 D 0.689
DREB1D Arabidopsis thaliana AT5G51990 D 0.719
DREB1C Arabidopsis thaliana AT4G25470 D 0.720
DREB1A Arabidopsis thaliana AT4G25480 D 0.755
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.741
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.751
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.678
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.719
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.751
Bo01335s010 Brassica oleracea Bo01335s010 I 0.701
Bo8g108050 Brassica oleracea Bo8g108050 I 0.686
Bo9g104770 Brassica oleracea Bo9g104770 I 0.719
Bra016763 Brassica rapa Bra016763 I 0.701
Bra028290 Brassica rapa Bra028290 I 0.719
Bra026963 Brassica rapa Bra026963 I 0.686
PK23332.1 Cannabis sativa PK23332.1 I 0.742
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.744
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.681
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.751
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.719
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.751
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.719
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.692
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.681
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.725
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.729
Cla002362 Citrullus lanatus Cla002362 I 0.710
Cla011674 Citrullus lanatus Cla011674 I 0.717
Cla006315 Citrullus lanatus Cla006315 I 0.737
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.684
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.684
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.684
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.681
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.693
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.689
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.739
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.740
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.740
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.691
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.741
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.719
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.692
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.742
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.725
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.728
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.691
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.691
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.684
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.710
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.725
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.751
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.697
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.852
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.842
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.793
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.691
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.691
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.691
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.691
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.691
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.685
MDP0000154764 Malus domestica MDP0000154764 I 0.716
MDP0000198054 Malus domestica MDP0000198054 I 0.714
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.682
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.727
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.751
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.722
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.700
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.717
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.700
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.686
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.696
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.681
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.689
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.689
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.693
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.693
mgf026642m Mimulus guttatus mgf026642m I 0.749
mgf017136m Mimulus guttatus mgf017136m I 0.708
mgf019061m Mimulus guttatus mgf019061m I 0.713
mgf026339m Mimulus guttatus mgf026339m I 0.687
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.731
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.735
OBART02G27760 Oryza barthii OBART02G27760 I 0.842
OBART04G22220 Oryza barthii OBART04G22220 I 0.793
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.793
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.842
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.793
DREB1E Oryza indica BGIOSGA016950 I 0.793
DREB1G Oryza indica BGIOSGA008804 I 0.842
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.842
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.793
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.842
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.793
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.793
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.842
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.793
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.842
DREB1E Oryza sativa OS04G0572400 D 0.793
DREB1G Oryza sativa OS02G0677300 D 0.842
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.772
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.842
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.842
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.691
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.706
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.688
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.719
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.745
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.751
Pm023769 Prunus mume Pm023769 I 0.710
Pm023772 Prunus mume Pm023772 I 0.709
Pm023775 Prunus mume Pm023775 I 0.713
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.713
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.717
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.729
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.710
30147.m014313 Ricinus communis 30147.m014313 I 0.751
30190.m011119 Ricinus communis 30190.m011119 I 0.685
60638.m00016 Ricinus communis 60638.m00016 I 0.704
30190.m011120 Ricinus communis 30190.m011120 I 0.690
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.719
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.739
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.685
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.685
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.729
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.688
Si011005m.g Setaria italica Si011005m.g I 0.782
Si018262m.g Setaria italica Si018262m.g I 0.832
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.720
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.719
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.715
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.707
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.699
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.699
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.702
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.704
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.704
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.782
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.842
TCM_016175 Theobroma cacao TCM_016175 I 0.714
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.718
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.715
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.702
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.782
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.842