CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRADI5G25570
(
Brachypodium distachyon
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
BRADI5G25570
T001386_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.688
0.840
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.688
0.840
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.688
0.840
ERF8
M01608_2.00
Arabidopsis thaliana
MGCCGNMNNN
NNNKNCGGCK
PBM
Weirauch et al.(2014)
pTH8095
0.678
0.760
ERF8
M06586_2.00
Arabidopsis thaliana
NYHDYCKCCGCCGYH
DRCGGCGGMGRHDRN
Dap-seq
OMalley et al.(2016)
ERF8_col_a
0.678
0.760
ERF8
M06587_2.00
Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN
NHDDYGRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ERF8_colamp_a
0.678
0.760
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI5G25570.1
AP2
22
73
PRYRGVRKRPWGRFAAEIRDPAKRARVWLGTFASAEAAARAYDAAARALRGP
Links
Other
AP2
family TFs
Other
Brachypodium distachyon
TFs
203 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si023330m.g
Setaria italica
Si023330m.g
I
0.797
Pavir.Gb00092
Panicum virgatum
Pavir.Gb00092
I
0.797
Pavir.Ga00187
Panicum virgatum
Pavir.Ga00187
I
0.797
ORUFI04G30650
Oryza rufipogon
ORUFI04G30650
I
0.791
OGLUM04G28860
Oryza glumaepatula
OGLUM04G28860
I
0.791
BGIOSGA014134
Oryza indica
BGIOSGA014134
I
0.791
OMERI04G24480
Oryza meridionalis
OMERI04G24480
I
0.791
OS04G0669200
Oryza sativa
OS04G0669200
I
0.791
ONIVA04G27460
Oryza nivara
ONIVA04G27460
I
0.791
Bo1g129710
Brassica oleracea
Bo1g129710
I
0.733
Bra021594
Brassica rapa
Bra021594
I
0.728
Pavir.Gb00545
Panicum virgatum
Pavir.Gb00545
I
0.728
LPERR02G05920
Leersia perrieri
LPERR02G05920
I
0.726
OPUNC02G05940
Oryza punctata
OPUNC02G05940
I
0.726
Pavir.Ga00485
Panicum virgatum
Pavir.Ga00485
I
0.724
GRMZM2G068967
Zea mays
GRMZM2G068967
I
0.724
GRMZM2G438202
Zea mays
GRMZM2G438202
I
0.724
Sb06g028090
Sorghum bicolor
Sb06g028090
I
0.724
Si010228m.g
Setaria italica
Si010228m.g
I
0.724
Bra001784
Brassica rapa
Bra001784
I
0.722
Bo3g074840
Brassica oleracea
Bo3g074840
I
0.722
GLYMA02G46340
Glycine max
GLYMA02G46340
I
0.721
BRADI5G21250
Brachypodium distachyon
BRADI5G21250
I
0.720
OGLUM02G06860
Oryza glumaepatula
OGLUM02G06860
I
0.718
ORGLA02G0063000
Oryza glaberrima
ORGLA02G0063000
I
0.718
OMERI02G07840
Oryza meridionalis
OMERI02G07840
I
0.718
ORUFI02G06880
Oryza rufipogon
ORUFI02G06880
I
0.718
ORUFI04G26530
Oryza rufipogon
ORUFI04G26530
I
0.717
OS04G0610400
Oryza sativa
OS04G0610400
I
0.717
ONIVA04G24000
Oryza nivara
ONIVA04G24000
I
0.717
LPERR04G20430
Leersia perrieri
LPERR04G20430
I
0.717
OGLUM04G24780
Oryza glumaepatula
OGLUM04G24780
I
0.717
OMERI04G20480
Oryza meridionalis
OMERI04G20480
I
0.717
OBART04G25320
Oryza barthii
OBART04G25320
I
0.717
ORGLA04G0219400
Oryza glaberrima
ORGLA04G0219400
I
0.717
BGIOSGA017088
Oryza indica
BGIOSGA017088
I
0.717
GRMZM2G079653
Zea mays
GRMZM2G079653
I
0.715
Pavir.Ab00660
Panicum virgatum
Pavir.Ab00660
I
0.715
Pavir.Aa03102
Panicum virgatum
Pavir.Aa03102
I
0.715
Sb04g006080
Sorghum bicolor
Sb04g006080
I
0.715
GRMZM2G146028
Zea mays
GRMZM2G146028
I
0.715
BRADI3G06562
Brachypodium distachyon
BRADI3G06562
I
0.715
GLYMA18G10290
Glycine max
GLYMA18G10290
I
0.713
Carubv10014475m.g
Capsella rubella
Carubv10014475m.g
I
0.713
Cagra.0316s0033
Capsella grandiflora
Cagra.0316s0033
I
0.713
OPUNC04G22340
Oryza punctata
OPUNC04G22340
I
0.711
Gorai.007G312200
Gossypium raimondii
Gorai.007G312200
I
0.711
GLYMA08G43300
Glycine max
GLYMA08G43300
I
0.710
Thhalv10021393m.g
Eutrema salsugineum
Thhalv10021393m.g
I
0.710
GLYMA07G23225
Glycine max
GLYMA07G23225
I
0.708
Bra030095
Brassica rapa
Bra030095
I
0.708
MTR_3g053690
Medicago truncatula
MTR_3g053690
I
0.708
Bo7g048170
Brassica oleracea
Bo7g048170
I
0.708
Ca_20544
Cicer arietinum
Ca_20544
I
0.708
Sb07g006210
Sorghum bicolor
Sb07g006210
I
0.707
Sb07g006190
Sorghum bicolor
Sb07g006190
I
0.707
Sb07g006195
Sorghum bicolor
Sb07g006195
I
0.707
Sb07g006200
Sorghum bicolor
Sb07g006200
I
0.707
Pavir.Fb00952
Panicum virgatum
Pavir.Fb00952
I
0.707
GRMZM2G020054
Zea mays
GRMZM2G020054
I
0.707
GRMZM2G089995
Zea mays
GRMZM2G089995
I
0.707
Si014469m.g
Setaria italica
Si014469m.g
I
0.707
Pavir.Fb01486
Panicum virgatum
Pavir.Fb01486
I
0.707
gene03450-v1.0-hybrid
Fragaria vesca
gene03450-v1.0-hybrid
I
0.705
Bo3g143350
Brassica oleracea
Bo3g143350
I
0.704
Bostr.19424s0625
Boechera stricta
Bostr.19424s0625
I
0.704
Bra010880
Brassica rapa
Bra010880
I
0.704
Si030741m.g
Setaria italica
Si030741m.g
N
0.704
Sb02g020910
Sorghum bicolor
Sb02g020910
N
0.704
Pavir.Fa01730
Panicum virgatum
Pavir.Fa01730
I
0.703
Traes_4BL_7EC2BFC7B
Triticum aestivum
Traes_4BL_7EC2BFC7B
I
0.700
GLYMA14G02360
Glycine max
GLYMA14G02360
I
0.700
Bra038261
Brassica rapa
Bra038261
I
0.699
Bo1g108970
Brassica oleracea
Bo1g108970
I
0.699
Bra039658
Brassica rapa
Bra039658
I
0.699
PGSC0003DMG400000681
Solanum tuberosum
PGSC0003DMG400000681
I
0.699
Lus10043182.g
Linum usitatissimum
Lus10043182.g
I
0.698
AC206951.3_FG017
Zea mays
AC206951.3_FG017
I
0.697
Bo5g109800
Brassica oleracea
Bo5g109800
I
0.697
Bra035792
Brassica rapa
Bra035792
I
0.697
ATERF-7
Arabidopsis lyrata
fgenesh2_kg.3__2255__AT3G20310.1
I
0.697
F775_20810
Aegilops tauschii
F775_20810
I
0.697
AMTR_s00077p00176570
Amborella trichopoda
AMTR_s00077p00176570
I
0.696
GSMUA_Achr9G11480_001
Musa acuminata
GSMUA_Achr9G11480_001
I
0.696
ONIVA10G08250
Oryza nivara
ONIVA10G08250
I
0.695
Pavir.Ib00527
Panicum virgatum
Pavir.Ib00527
N
0.695
ORGLA10G0072500
Oryza glaberrima
ORGLA10G0072500
I
0.695
OS10G0390800
Oryza sativa
OS10G0390800
I
0.695
Eucgr.K00734
Eucalyptus grandis
Eucgr.K00734
I
0.695
OMERI10G05820
Oryza meridionalis
OMERI10G05820
I
0.695
ORUFI10G09060
Oryza rufipogon
ORUFI10G09060
I
0.695
OGLUM10G08400
Oryza glumaepatula
OGLUM10G08400
I
0.695
BGIOSGA032849
Oryza indica
BGIOSGA032849
I
0.695
Pavir.Ib00528
Panicum virgatum
Pavir.Ib00528
I
0.694
Bra018864
Brassica rapa
Bra018864
I
0.693
Gorai.002G067600
Gossypium raimondii
Gorai.002G067600
I
0.693
GSMUA_Achr11G25600_001
Musa acuminata
GSMUA_Achr11G25600_001
I
0.692
Solyc07g049490.1
Solanum lycopersicum
Solyc07g049490.1
I
0.691
Pavir.Ba02999
Panicum virgatum
Pavir.Ba02999
N
0.691
Si031079m.g
Setaria italica
Si031079m.g
I
0.690
Pavir.Ba00136
Panicum virgatum
Pavir.Ba00136
I
0.690
Sb02g042760
Sorghum bicolor
Sb02g042760
I
0.690
Bo6g031240
Brassica oleracea
Bo6g031240
I
0.690
Pavir.Bb03609
Panicum virgatum
Pavir.Bb03609
I
0.690
GRMZM2G025062
Zea mays
GRMZM2G025062
I
0.690
cassava34729.m1
Manihot esculenta
cassava34729.m1
I
0.689
ERF7
Arabidopsis thaliana
AT3G20310
D
0.688
Thhalv10003431m.g
Eutrema salsugineum
Thhalv10003431m.g
I
0.688
BGIOSGA012597
Oryza indica
BGIOSGA012597
N
0.687
BGIOSGA023726
Oryza indica
BGIOSGA023726
N
0.687
OS03G0341000
Oryza sativa
OS03G0341000
N
0.687
OS07G0674800
Oryza sativa
OS07G0674800
N
0.687
OMERI07G22780
Oryza meridionalis
OMERI07G22780
N
0.687
OMERI03G15020
Oryza meridionalis
OMERI03G15020
N
0.687
Gorai.001G253100
Gossypium raimondii
Gorai.001G253100
I
0.687
ONIVA03G17860
Oryza nivara
ONIVA03G17860
N
0.687
OGLUM07G26170
Oryza glumaepatula
OGLUM07G26170
N
0.687
OGLUM03G17210
Oryza glumaepatula
OGLUM03G17210
N
0.687
LPERR03G14670
Leersia perrieri
LPERR03G14670
N
0.687
OBART07G26160
Oryza barthii
OBART07G26160
N
0.687
ORUFI07G27120
Oryza rufipogon
ORUFI07G27120
N
0.687
ONIVA07G25780
Oryza nivara
ONIVA07G25780
N
0.687
OPUNC03G16250
Oryza punctata
OPUNC03G16250
N
0.687
ORUFI03G17430
Oryza rufipogon
ORUFI03G17430
N
0.687
VIT_19s0014g02240
Vitis vinifera
VIT_19s0014g02240
I
0.687
ORGLA07G0205000
Oryza glaberrima
ORGLA07G0205000
N
0.687
ORGLA03G0161100
Oryza glaberrima
ORGLA03G0161100
N
0.687
OPUNC07G24590
Oryza punctata
OPUNC07G24590
N
0.687
SapurV1A.1325s0040
Salix purpurea
SapurV1A.1325s0040
I
0.686
Gorai.004G032500
Gossypium raimondii
Gorai.004G032500
I
0.686
Ca_22534
Cicer arietinum
Ca_22534
I
0.686
POPTR_0001s40770
Populus trichocarpa
POPTR_0001s40770
I
0.686
POPTR_0011s11620
Populus trichocarpa
POPTR_0011s11620
I
0.686
Ciclev10009484m.g
Citrus clementina
Ciclev10009484m.g
I
0.685
evm.TU.supercontig_131.83
Carica papaya
evm.TU.supercontig_131.83
I
0.685
Cucsa.122930
Cucumis sativus
Cucsa.122930
I
0.685
27904.m000217
Ricinus communis
27904.m000217
I
0.685
cassava37846.valid.m1
Manihot esculenta
cassava37846.valid.m1
I
0.685
TCM_031608
Theobroma cacao
TCM_031608
I
0.685
Gorai.009G375700
Gossypium raimondii
Gorai.009G375700
I
0.685
Pavir.Fa01728
Panicum virgatum
Pavir.Fa01728
I
0.685
GLYMA12G26836
Glycine max
GLYMA12G26836
I
0.685
orange1.1g028454m.g
Citrus sinensis
orange1.1g028454m.g
I
0.685
Pavir.Fb00951
Panicum virgatum
Pavir.Fb00951
I
0.685
Si014474m.g
Setaria italica
Si014474m.g
I
0.684
ORUFI03G05920
Oryza rufipogon
ORUFI03G05920
N
0.684
Pavir.Ia04158
Panicum virgatum
Pavir.Ia04158
I
0.684
ORGLA03G0058800
Oryza glaberrima
ORGLA03G0058800
N
0.684
ONIVA03G06100
Oryza nivara
ONIVA03G06100
N
0.684
OGLUM03G06090
Oryza glumaepatula
OGLUM03G06090
N
0.684
Bo3g066710
Brassica oleracea
Bo3g066710
I
0.683
Bostr.28625s0184
Boechera stricta
Bostr.28625s0184
I
0.683
Bra001588
Brassica rapa
Bra001588
I
0.683
Pavir.J12680
Panicum virgatum
Pavir.J12680
N
0.682
Sb01g045050
Sorghum bicolor
Sb01g045050
N
0.682
GRMZM2G544539
Zea mays
GRMZM2G544539
I
0.682
OPUNC03G05900
Oryza punctata
OPUNC03G05900
I
0.681
GSMUA_Achr8G03550_001
Musa acuminata
GSMUA_Achr8G03550_001
I
0.681
Pavir.Ia00066
Panicum virgatum
Pavir.Ia00066
I
0.680
BGIOSGA011326
Oryza indica
BGIOSGA011326
I
0.680
OBART03G06100
Oryza barthii
OBART03G06100
I
0.680
ONIVA03G06110
Oryza nivara
ONIVA03G06110
I
0.680
OMERI03G05920
Oryza meridionalis
OMERI03G05920
I
0.680
GLYMA13G30990
Glycine max
GLYMA13G30990
I
0.680
ORGLA03G0058900
Oryza glaberrima
ORGLA03G0058900
I
0.680
mgf019214m
Mimulus guttatus
mgf019214m
I
0.680
Gorai.005G200200
Gossypium raimondii
Gorai.005G200200
I
0.680
Si036118m.g
Setaria italica
Si036118m.g
I
0.680
OS03G0183300
Oryza sativa
OS03G0183300
I
0.680
OGLUM03G06100
Oryza glumaepatula
OGLUM03G06100
I
0.680
Ca_11261
Cicer arietinum
Ca_11261
I
0.680
MLOC_68290
Hordeum vulgare
MLOC_68290
I
0.679
GLYMA15G08370
Glycine max
GLYMA15G08370
I
0.679
Si038911m.g
Setaria italica
Si038911m.g
I
0.679
Sb05g004170
Sorghum bicolor
Sb05g004170
I
0.679
Bra030957
Brassica rapa
Bra030957
I
0.679
Traes_5BL_60FC12DA6
Triticum aestivum
Traes_5BL_60FC12DA6
I
0.679
Traes_5BS_80C46D9C4
Triticum aestivum
Traes_5BS_80C46D9C4
I
0.679
TRIUR3_28710
Triticum urartu
TRIUR3_28710
I
0.679
Traes_4AS_8A64DBE8E
Triticum aestivum
Traes_4AS_8A64DBE8E
I
0.679
OPUNC03G38860
Oryza punctata
OPUNC03G38860
I
0.679
Thhalv10011796m.g
Eutrema salsugineum
Thhalv10011796m.g
I
0.679
TCM_026234
Theobroma cacao
TCM_026234
I
0.679
Gorai.001G252600
Gossypium raimondii
Gorai.001G252600
I
0.678
ERF8
Arabidopsis thaliana
AT1G53170
D
0.678
Cla023722
Citrullus lanatus
Cla023722
I
0.678
gw1.130.147.1
Physcomitrella patens
gw1.130.147.1
I
0.678
GSMUA_Achr10G09150_001
Musa acuminata
GSMUA_Achr10G09150_001
I
0.678
Eucgr.F01164
Eucalyptus grandis
Eucgr.F01164
I
0.678
Sb09g024400
Sorghum bicolor
Sb09g024400
I
0.678
BRADI1G00670
Brachypodium distachyon
BRADI1G00670
I
0.678
SapurV1A.1244s0010
Salix purpurea
SapurV1A.1244s0010
I
0.678
F775_25471
Aegilops tauschii
F775_25471
I
0.677
GLYMA12G35550
Glycine max
GLYMA12G35550
I
0.677
GLYMA06G35710
Glycine max
GLYMA06G35710
I
0.677
Solyc07g053740.1
Solanum lycopersicum
Solyc07g053740.1
I
0.677
Traes_2BL_0B09B840B
Triticum aestivum
Traes_2BL_0B09B840B
I
0.677
Bo2g122260
Brassica oleracea
Bo2g122260
I
0.677
TCM_008162
Theobroma cacao
TCM_008162
I
0.677
ATERF-8
Arabidopsis lyrata
fgenesh2_kg.1__4394__AT1G53170.1
I
0.677
MLOC_80197
Hordeum vulgare
MLOC_80197
I
0.677
Bra036016
Brassica rapa
Bra036016
I
0.677
GLYMA13G34920
Glycine max
GLYMA13G34920
I
0.677