SNZ (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh1_pm.C_scaffold_4001673 T001630_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC

GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.801 0.939
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN

NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.788 0.898
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_4001673 AP2 103 153

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29634.m002156 Ricinus communis 29634.m002156 N 0.000
Aquca_010_00478 Aquilegia coerulea Aquca_010_00478 N 0.000
Bostr.0568s0096 Boechera stricta Bostr.0568s0096 N 0.000
cassava35611.valid.m1 Manihot esculenta cassava35611.valid.m1 N 0.000
chr3.CM0127.460.nc Lotus japonicus chr3.CM0127.460.nc N 0.000
Cla014426 Citrullus lanatus Cla014426 N 0.000
Cla014744 Citrullus lanatus Cla014744 N 0.000
Cucsa.127390 Cucumis sativus Cucsa.127390 N 0.000
Cucsa.201400 Cucumis sativus Cucsa.201400 N 0.000
Eucgr.I02451 Eucalyptus grandis Eucgr.I02451 N 0.000
evm.TU.supercontig_6.108 Carica papaya evm.TU.supercontig_6.108 N 0.000
gene14780-v1.0-hybrid Fragaria vesca gene14780-v1.0-hybrid N 0.000
GLYMA11G09761 Glycine max GLYMA11G09761 N 0.000
Gorai.003G015400 Gossypium raimondii Gorai.003G015400 N 0.000
Gorai.008G068100 Gossypium raimondii Gorai.008G068100 N 0.000
Lus10024014.g Linum usitatissimum Lus10024014.g N 0.000
Lus10041740.g Linum usitatissimum Lus10041740.g N 0.000
MDP0000575908 Malus domestica MDP0000575908 N 0.000
PGSC0003DMG400014900 Solanum tuberosum PGSC0003DMG400014900 N 0.000
PK13108.1 Cannabis sativa PK13108.1 N 0.000
Pm026616 Prunus mume Pm026616 N 0.000
POPTR_0005s12520 Populus trichocarpa POPTR_0005s12520 N 0.000
POPTR_0007s12760 Populus trichocarpa POPTR_0007s12760 N 0.000
PRUPE_ppa003124mg Prunus persica PRUPE_ppa003124mg N 0.000
SapurV1A.0254s0130 Salix purpurea SapurV1A.0254s0130 N 0.000
SapurV1A.1131s0040 Salix purpurea SapurV1A.1131s0040 N 0.000
SapurV1A.4211s0010 Salix purpurea SapurV1A.4211s0010 N 0.000
SCL4 Arabidopsis thaliana AT5G66770 N 0.000
Solyc02g085340.1 Solanum lycopersicum Solyc02g085340.1 N 0.000
TCM_000399 Theobroma cacao TCM_000399 N 0.000
Thhalv10003860m.g Eutrema salsugineum Thhalv10003860m.g N 0.000
VIT_04s0023g01660 Vitis vinifera VIT_04s0023g01660 N 0.000