CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_kg.2__1107__AT1G68550.2
(
Arabidopsis lyrata
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
fgenesh2_kg.2__1107__AT1G68550.2
T001652_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.763
0.863
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.763
0.863
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.763
0.863
ERF119
M01093_2.00
Arabidopsis thaliana
NNNGCCGNN
NNCGGCNNN
PBM
Lambert et al.(2019)
pTH11551
0.706
0.784
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.2__1107__AT1G68550.2
AP2
115
166
KKPVGVRQRKWGKWAAEIRHPIKKTRTWLGTFDTLEEAAKAYDAKKIEFDAL
Links
Other
AP2
family TFs
Other
Arabidopsis lyrata
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy