ddf2 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh2_kg.2__175__AT1G63030.1 T001656_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ddf2
M00965_2.00		 Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.787 0.824
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.787 0.824
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.787 0.824
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.787 0.824
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.787 0.824
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.787 0.824
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.775 0.961
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.775 0.961
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.775 0.961
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.681 0.745
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.681 0.745
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.681 0.745
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.681 0.745
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.678 0.745
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.678 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00965_2.00 AP2 28 79

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__175__AT1G63030.1 AP2 28 79

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.840
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.840
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.822
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.822
Bo5g016750 Brassica oleracea Bo5g016750 I 0.811
Bra027612 Brassica rapa Bra027612 I 0.797
DREB1F Arabidopsis thaliana AT1G12610 D 0.787
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.787
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.781
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.779
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.779
Bo8g108050 Brassica oleracea Bo8g108050 I 0.775
DREB1E Arabidopsis thaliana AT1G63030 D 0.775
Bra026963 Brassica rapa Bra026963 I 0.775
Bra016763 Brassica rapa Bra016763 I 0.774
Bo01335s010 Brassica oleracea Bo01335s010 I 0.774
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.768
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.748
30190.m011119 Ricinus communis 30190.m011119 I 0.748
Bra019777 Brassica rapa Bra019777 I 0.744
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.744
mgf017136m Mimulus guttatus mgf017136m I 0.741
mgf019061m Mimulus guttatus mgf019061m I 0.741
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.738
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.737
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.727
60638.m00016 Ricinus communis 60638.m00016 I 0.726
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.726
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.726
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.726
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.720
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.719
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.717
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.714
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.714
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.713
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.713
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.713
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.713
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.713
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.712
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.711
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.711
Cla011674 Citrullus lanatus Cla011674 I 0.710
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.707
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.706
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.706
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.705
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.705
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.705
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.704
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.704
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.704
mgf026642m Mimulus guttatus mgf026642m I 0.704
MDP0000154764 Malus domestica MDP0000154764 I 0.703
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.703
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.702
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.702
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.702
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.700
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.700
Pm023775 Prunus mume Pm023775 I 0.700
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.700
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.698
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.698
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.697
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.697
PK23332.1 Cannabis sativa PK23332.1 I 0.697
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.696
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.694
TCM_016175 Theobroma cacao TCM_016175 I 0.693
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.692
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.692
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.692
Pm023769 Prunus mume Pm023769 I 0.692
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.692
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.692
Cla006315 Citrullus lanatus Cla006315 I 0.690
MDP0000198054 Malus domestica MDP0000198054 I 0.690
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.688
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.686
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.686
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.685
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.685
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.685
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.685
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.682
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.682
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.682
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.682
Pm023772 Prunus mume Pm023772 I 0.682
DREB1A Arabidopsis thaliana AT4G25480 D 0.681
30190.m011120 Ricinus communis 30190.m011120 I 0.681
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.681
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.680
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.679
Bo9g104770 Brassica oleracea Bo9g104770 I 0.678
DREB1D Arabidopsis thaliana AT5G51990 D 0.678
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.678
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.678
Bra028290 Brassica rapa Bra028290 I 0.678
30147.m014313 Ricinus communis 30147.m014313 I 0.678
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.678
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.678
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.678