ddf2 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh2_kg.2__175__AT1G63030.1 T001656_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.787 0.824
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.787 0.824
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.787 0.824
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.787 0.824
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.787 0.824
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.787 0.824
DREB1E
M00963_2.00
Arabidopsis thaliana
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana
0.775 0.961
DREB1E
M06589_2.00
Arabidopsis thaliana
NNNYYGYCGACATVD

HBATGTCGRCRRNNN
Dap-seq
OMalley et al.(2016)
DDF2_col_a
0.775 0.961
DREB1E
M09702_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_03
0.775 0.961
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.681 0.745
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.681 0.745
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.681 0.745
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.681 0.745
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.678 0.745
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.678 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00965_2.00 AP2 28 79

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.2__175__AT1G63030.1 AP2 28 79

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgeneshCV_pg.C_scaffold_4000372 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000372 I 0.000
Genemark1.2462_g Coccomyxa subellipsoidea C169 Genemark1.2462_g I 0.000
EuGene.0000020579 Micromonas pusilla EuGene.0000020579 I 0.000
AZW_PierreAnnot2.00051 Micromonas sp RCC299 AZW_PierreAnnot2.00051 I 0.000
OSTLU_30413 Ostreococcus lucimarinus OSTLU_30413 I 0.000
fgenesh1_pm.chr_3_#_182 Ostreococcus RCC809 fgenesh1_pm.chr_3_#_182 I 0.000
estExt_fgenesh1_pg.C_Chr_03.00010061 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_03.00010061 D 0.000
estExt_fgenesh1_pg.C_430108 Physcomitrella patens estExt_fgenesh1_pg.C_430108 I 0.000
SELMODRAFT_59730 Selaginella moellendorffii SELMODRAFT_59730 N 0.000
SELMODRAFT_69727 Selaginella moellendorffii SELMODRAFT_69727 N 0.000
SELMODRAFT_432103 Selaginella moellendorffii SELMODRAFT_432103 I 0.000
SELMODRAFT_406795 Selaginella moellendorffii SELMODRAFT_406795 I 0.000