fgenesh2_kg.3__2537__AT3G23220.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh2_kg.3__2537__AT3G23220.1 T001666_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD

HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.876 0.942
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH

DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.876 0.942
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.840 0.827
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.792 0.808
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.741 0.750
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.741 0.750
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN

NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.726 0.673
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.724 0.731
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.724 0.731
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.724 0.731
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.715 0.712
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.715 0.712
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.715 0.712
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH

DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.715 0.673
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD

HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.715 0.673
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN

NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.714 0.731
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN

NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.714 0.731
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN

NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.714 0.731
ERF094
M01602_2.00
Arabidopsis thaliana
VGCCGCCD

HGGCGGCB
PBM
Weirauch et al.(2014)
pTH8276
0.714 0.769
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.713 0.731
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.709 0.712
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.709 0.712
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.709 0.712
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.704 0.712
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.704 0.712
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.702 0.712
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN

NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.697 0.673
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD

HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.697 0.673
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH

DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.697 0.673
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD

HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.694 0.654
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD

HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.694 0.654
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN

NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.694 0.654
ERF15
M00718_2.00
Arabidopsis thaliana
NGSCGSCB

VGSCGSCN
PBM
Chang et al.(2013)
pTH7336
0.694 0.692
ERF15
M06604_2.00
Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY

RHGGCGGCKVHDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF15_colamp_a
0.694 0.692
ERF15
M06605_2.00
Arabidopsis thaliana
NNYHDYMGCCGCCRY

RYGGCGGCKRHDRNN
Dap-seq
OMalley et al.(2016)
ERF15_col
0.694 0.692
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.690 0.673
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.687 0.712
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.687 0.712
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.687 0.712
ERF091
M06638_2.00
Arabidopsis thaliana
NNHNYHDCCGCCGCCRY

RYGGCGGCGGHDRNDNN
Dap-seq
OMalley et al.(2016)
AT4G18450_col_a
0.687 0.692
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.686 0.712
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.684 0.712
RAP2-3
M01050_2.00
Arabidopsis thaliana
CGCCGCCR

YGGCGGCG
PBM
Sullivan et al.(2014)
pTH8811
0.680 0.673
RAP2-3
M00847_2.00
Arabidopsis thaliana
NMGCCGCCDN

NHGGCGGCKN
PBM
Franco-Zorrilla et al.(2014)
RAP2.3
0.680 0.673
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN

NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.679 0.673
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN

NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.679 0.673
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD

HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.679 0.673
ERF1B
M09703_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.679 0.673
ERF1B
M09704_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.679 0.673
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.679 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__2537__AT3G23220.1 AP2 1 53

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

Invalid Input OrderBy

1399 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action