RAP2.9 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh2_kg.6__2823__AT4G06746.1 T001690_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.820 1.000
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.820 1.000
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.770 0.940
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.769 0.900
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.769 0.900
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.768 0.880
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.768 0.880
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.766 0.940
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.766 0.940
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.766 0.940
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.766 0.940
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.715 0.860
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.715 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__2823__AT4G06746.1 AP2 22 73

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSOPRG00000010358 Ochotona princeps ENSOPRG00000010358 I 0.000
Afo_R010661 Aptenodytes forsteri Afo_R010661 N 0.000
Aan_R008738 Calypte anna Aan_R008738 N 0.000
ENSXMAG00000005053 Xiphophorus maculatus ENSXMAG00000005053 N 0.000
ahr2a Takifugu rubripes ENSTRUG00000009303 N 0.000
ahrr Takifugu rubripes ENSTRUG00000003745 N 0.000
ahr2 Tetraodon nigroviridis ENSTNIG00000017165 N 0.000
ENSORLG00000018196 Oryzias latipes ENSORLG00000018196 N 0.000
ENSAPLG00000003921 Anas platyrhynchos ENSAPLG00000003921 N 0.000
ENSONIG00000010232 Oreochromis niloticus ENSONIG00000010232 N 0.000
ENSOCUG00000028055 Oryctolagus cuniculus ENSOCUG00000028055 N 0.000
ENSLOCG00000013271 Lepisosteus oculatus ENSLOCG00000013271 N 0.000
ENSLACG00000012651 Latimeria chalumnae ENSLACG00000012651 N 0.000
ENSGMOG00000004709 Gadus morhua ENSGMOG00000004709 N 0.000
ENSFALG00000003870 Ficedula albicollis ENSFALG00000003870 N 0.000
ahr2 Danio rerio ENSDARG00000021833 N 0.000
Pvit_18498 Pogona vitticeps Pvit_18498 N 0.000