CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA02G09600
(
Glycine max
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GLYMA02G09600
T001741_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC
GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.848
0.979
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.847
0.958
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA02G09600.1
AP2
161
210
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRG
Links
Other
AP2
family TFs
Other
Glycine max
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA10G22390
Glycine max
GLYMA10G22390
I
0.860
PGSC0003DMG400012038
Solanum tuberosum
PGSC0003DMG400012038
I
0.850
PGSC0003DMG400011046
Solanum tuberosum
PGSC0003DMG400011046
I
0.850
GRMZM2G416701
Zea mays
GRMZM2G416701
I
0.850
Sb10g001490
Sorghum bicolor
Sb10g001490
I
0.850
Gorai.003G139800
Gossypium raimondii
Gorai.003G139800
I
0.850
PK16652.1
Cannabis sativa
PK16652.1
I
0.850
Lus10040365.g
Linum usitatissimum
Lus10040365.g
I
0.850
Gorai.011G241700
Gossypium raimondii
Gorai.011G241700
I
0.850
Cucsa.165940
Cucumis sativus
Cucsa.165940
I
0.850
Cla020387
Citrullus lanatus
Cla020387
I
0.850
SMZ
Arabidopsis thaliana
AT3G54990
D
0.848
Bo8g087280
Brassica oleracea
Bo8g087280
I
0.848
SMZ
Arabidopsis lyrata
fgenesh2_kg.5__1910__AT3G54990.1
I
0.848
Cagra.1742s0021
Capsella grandiflora
Cagra.1742s0021
I
0.848
Eucgr.G02793
Eucalyptus grandis
Eucgr.G02793
I
0.848
Carubv10018526m.g
Capsella rubella
Carubv10018526m.g
I
0.848
Thhalv10010513m.g
Eutrema salsugineum
Thhalv10010513m.g
I
0.848
Bostr.0697s0115
Boechera stricta
Bostr.0697s0115
I
0.848
Bra007123
Brassica rapa
Bra007123
I
0.848
Bra020262
Brassica rapa
Bra020262
I
0.847
Carubv10026292m.g
Capsella rubella
Carubv10026292m.g
I
0.847
Thhalv10013367m.g
Eutrema salsugineum
Thhalv10013367m.g
I
0.847
TOE2
Arabidopsis thaliana
AT5G60120
D
0.847
Bostr.26833s0222
Boechera stricta
Bostr.26833s0222
I
0.847
Cagra.1317s0005
Capsella grandiflora
Cagra.1317s0005
I
0.847
Bo9g141100
Brassica oleracea
Bo9g141100
I
0.847
Bra002510
Brassica rapa
Bra002510
I
0.847
Bo6g068410
Brassica oleracea
Bo6g068410
I
0.833
MTR_1g049140
Medicago truncatula
MTR_1g049140
I
0.832
Pm018608
Prunus mume
Pm018608
I
0.817
PRUPE_ppa018704mg
Prunus persica
PRUPE_ppa018704mg
I
0.817
gene23316-v1.0-hybrid
Fragaria vesca
gene23316-v1.0-hybrid
I
0.813
MDP0000281079
Malus domestica
MDP0000281079
I
0.808
MDP0000285955
Malus domestica
MDP0000285955
I
0.808
Ca_26761
Cicer arietinum
Ca_26761
I
0.800
Cagra.0716s0040
Capsella grandiflora
Cagra.0716s0040
I
0.788
Carubv10023614m.g
Capsella rubella
Carubv10023614m.g
I
0.788
SNZ
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4001673
I
0.781
Bostr.23794s0149
Boechera stricta
Bostr.23794s0149
I
0.781
SNZ
Arabidopsis thaliana
AT2G39250
I
0.781
Al_scaffold_0003_2798
Arabidopsis lyrata
Al_scaffold_0003_2798
I
0.686