CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
GLYMA08G15350
(
Glycine max
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GLYMA08G15350
T001846_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.760
0.796
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.760
0.796
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.760
0.796
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.747
0.776
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.745
0.776
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.739
0.755
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.739
0.755
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.731
0.755
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.731
0.755
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.731
0.755
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.723
0.735
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.719
0.796
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN
NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.714
0.755
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.712
0.755
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.712
0.755
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.712
0.735
RAP2-6
M00717_2.00
Arabidopsis thaliana
NBGCYGNH
DNCRGCVN
PBM
Chang et al.(2013)
pTH7225
0.706
0.837
RAP2-6
M00841_2.00
Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN
PBM
Franco-Zorrilla et al.(2014)
RAP2.6
0.706
0.837
RAP2-6
M06579_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
RAP26_col_a
0.706
0.837
RAP2-6
M06580_2.00
Arabidopsis thaliana
CGCCGY
RCGGCG
Dap-seq
OMalley et al.(2016)
RAP26_colamp_a
0.706
0.837
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.696
0.755
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.696
0.755
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.696
0.755
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.696
0.714
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.696
0.714
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.696
0.714
O65242_TOBAC
M09730_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.695
0.633
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.691
0.735
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.682
0.714
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.682
0.714
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN
NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.682
0.714
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.681
0.653
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.677
0.714
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.677
0.714
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.677
0.714
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA08G15350.1
AP2
158
209
RKYRGVRQRPWGKWAAEIRDPLKARRVWLGTFETAEDAARAYDQASLRFRGN
Links
Other
AP2
family TFs
Other
Glycine max
TFs
967 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy