CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
GLYMA10G38420
(
Glycine max
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GLYMA10G38420
T001896_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA
TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.698
0.875
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA10G38420.1
AP2
44
93
RYRGTRCRSGKWVSEIREPRKTNRIWLGTYPTAEMAAAAYDVAALALKGP
Links
Other
AP2
family TFs
Other
Glycine max
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
scaffold_101390.1
Arabidopsis lyrata
scaffold_101390.1
I
0.704
TCM_016176
Theobroma cacao
TCM_016176
I
0.704
fgenesh1_pm.C_scaffold_1001063
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1001063
I
0.704
Cagra.6357s0007
Capsella grandiflora
Cagra.6357s0007
I
0.701
Carubv10022214m.g
Capsella rubella
Carubv10022214m.g
I
0.701
Cla011673
Citrullus lanatus
Cla011673
I
0.699
Cla004491
Citrullus lanatus
Cla004491
I
0.698
AT1G63040
Arabidopsis thaliana
AT1G63040
D
0.698
Cucsa.302760
Cucumis sativus
Cucsa.302760
I
0.694
Carubv10012147m.g
Capsella rubella
Carubv10012147m.g
I
0.691
PGSC0003DMG400022759
Solanum tuberosum
PGSC0003DMG400022759
I
0.691
Thhalv10009659m.g
Eutrema salsugineum
Thhalv10009659m.g
I
0.691
Solyc08g080290.2
Solanum lycopersicum
Solyc08g080290.2
I
0.691
Aquca_013_00433
Aquilegia coerulea
Aquca_013_00433
I
0.690
Cagra.0568s0175
Capsella grandiflora
Cagra.0568s0175
I
0.686
Bostr.13671s0198
Boechera stricta
Bostr.13671s0198
I
0.683
30147.m014311
Ricinus communis
30147.m014311
I
0.681
MDP0000189347
Malus domestica
MDP0000189347
I
0.678