CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA11G31401
(
Glycine max
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GLYMA11G31401
T001912_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.708
0.760
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.701
0.760
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.701
0.760
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.701
0.760
O65242_TOBAC
M09730_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.686
0.840
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.685
0.720
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA11G31401.1
AP2
121
172
NKFRGVRQRPWGRWTAEIRDPTQRKRVWLGTFDTAEEAAAVYDEAAVKLKGP
Links
Other
AP2
family TFs
Other
Glycine max
TFs
124 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_08911
Cicer arietinum
Ca_08911
N
0.833
Ca_08913
Cicer arietinum
Ca_08913
N
0.833
POPTR_0013s15440
Populus trichocarpa
POPTR_0013s15440
I
0.744
GLYMA02G40320
Glycine max
GLYMA02G40320
I
0.726
SapurV1A.1111s0070
Salix purpurea
SapurV1A.1111s0070
I
0.720
28641.m000082
Ricinus communis
28641.m000082
I
0.720
cassava27467.m1
Manihot esculenta
cassava27467.m1
I
0.719
MDP0000308379
Malus domestica
MDP0000308379
I
0.715
MDP0000854039
Malus domestica
MDP0000854039
I
0.715
VIT_06s0004g08190
Vitis vinifera
VIT_06s0004g08190
I
0.714
SapurV1A.1017s0070
Salix purpurea
SapurV1A.1017s0070
I
0.713
POPTR_0015s06070
Populus trichocarpa
POPTR_0015s06070
I
0.713
TCM_042300
Theobroma cacao
TCM_042300
I
0.711
Bostr.7867s0626
Boechera stricta
Bostr.7867s0626
I
0.709
gene13118-v1.0-hybrid
Fragaria vesca
gene13118-v1.0-hybrid
I
0.709
Aquca_037_00045
Aquilegia coerulea
Aquca_037_00045
I
0.709
CRF3
Arabidopsis thaliana
AT5G53290
D
0.708
Carubv10026682m.g
Capsella rubella
Carubv10026682m.g
I
0.708
CRF3
Arabidopsis lyrata
scaffold_801806.1
I
0.708
Cagra.0084s0074
Capsella grandiflora
Cagra.0084s0074
I
0.708
Gorai.009G355700
Gossypium raimondii
Gorai.009G355700
I
0.708
Bra003068
Brassica rapa
Bra003068
I
0.708
Bostr.26833s0952
Boechera stricta
Bostr.26833s0952
I
0.708
Bo9g111050
Brassica oleracea
Bo9g111050
I
0.708
Bo2g045930
Brassica oleracea
Bo2g045930
I
0.708
Thhalv10013898m.g
Eutrema salsugineum
Thhalv10013898m.g
I
0.708
Bra022643
Brassica rapa
Bra022643
I
0.708
TCM_032408
Theobroma cacao
TCM_032408
I
0.708
30169.m006542
Ricinus communis
30169.m006542
I
0.707
cassava32471.m1
Manihot esculenta
cassava32471.m1
I
0.707
mgf018116m
Mimulus guttatus
mgf018116m
I
0.707
Solyc03g007460.1
Solanum lycopersicum
Solyc03g007460.1
I
0.707
cassava7228.valid.m1
Manihot esculenta
cassava7228.valid.m1
I
0.707
POPTR_0012s01260
Populus trichocarpa
POPTR_0012s01260
I
0.707
Solyc06g051840.1
Solanum lycopersicum
Solyc06g051840.1
I
0.707
VIT_16s0050g02400
Vitis vinifera
VIT_16s0050g02400
I
0.707
TCM_015336
Theobroma cacao
TCM_015336
I
0.707
Eucgr.K00321
Eucalyptus grandis
Eucgr.K00321
I
0.707
PK28823.1
Cannabis sativa
PK28823.1
I
0.707
SapurV1A.1442s0010
Salix purpurea
SapurV1A.1442s0010
I
0.707
orange1.1g047455m.g
Citrus sinensis
orange1.1g047455m.g
I
0.707
PGSC0003DMG400036493
Solanum tuberosum
PGSC0003DMG400036493
I
0.707
SapurV1A.1043s0120
Salix purpurea
SapurV1A.1043s0120
I
0.707
GLYMA11G02140
Glycine max
GLYMA11G02140
I
0.707
Gorai.006G200400
Gossypium raimondii
Gorai.006G200400
I
0.707
Gorai.008G271200
Gossypium raimondii
Gorai.008G271200
I
0.707
Ciclev10005220m.g
Citrus clementina
Ciclev10005220m.g
I
0.707
SapurV1A.2151s0020
Salix purpurea
SapurV1A.2151s0020
I
0.707
PGSC0003DMG400002350
Solanum tuberosum
PGSC0003DMG400002350
I
0.707
evm.TU.supercontig_2.277
Carica papaya
evm.TU.supercontig_2.277
I
0.706
Cla013632
Citrullus lanatus
Cla013632
I
0.703
CRF4
Arabidopsis lyrata
scaffold_701473.1
I
0.702
CRF4
Arabidopsis thaliana
AT4G27950
D
0.701
Eucgr.A02669
Eucalyptus grandis
Eucgr.A02669
I
0.701
Cagra.1225s0103
Capsella grandiflora
Cagra.1225s0103
I
0.701
Carubv10005229m.g
Capsella rubella
Carubv10005229m.g
I
0.701
GLYMA01G43350
Glycine max
GLYMA01G43350
I
0.700
GLYMA04G41740
Glycine max
GLYMA04G41740
I
0.700
GLYMA06G13040
Glycine max
GLYMA06G13040
I
0.700
CRF1
Arabidopsis thaliana
AT4G11140
I
0.699
Carubv10001539m.g
Capsella rubella
Carubv10001539m.g
I
0.699
CRF1
Arabidopsis lyrata
fgenesh2_kg.6__3086__AT4G11140.1
I
0.699
GLYMA20G33840
Glycine max
GLYMA20G33840
I
0.698
Lus10027573.g
Linum usitatissimum
Lus10027573.g
I
0.697
Lus10039324.g
Linum usitatissimum
Lus10039324.g
I
0.697
Bostr.25463s0212
Boechera stricta
Bostr.25463s0212
I
0.697
Thhalv10029132m.g
Eutrema salsugineum
Thhalv10029132m.g
I
0.697
Cucsa.012850
Cucumis sativus
Cucsa.012850
I
0.697
Cla004291
Citrullus lanatus
Cla004291
I
0.697
AMTR_s00097p00165740
Amborella trichopoda
AMTR_s00097p00165740
I
0.697
Bo3g045150
Brassica oleracea
Bo3g045150
I
0.697
Ca_03948
Cicer arietinum
Ca_03948
I
0.696
POPTR_0019s15190
Populus trichocarpa
POPTR_0019s15190
I
0.696
PRUPE_ppa008720mg
Prunus persica
PRUPE_ppa008720mg
I
0.696
orange1.1g043400m.g
Citrus sinensis
orange1.1g043400m.g
I
0.696
SapurV1A.4828s0010
Salix purpurea
SapurV1A.4828s0010
I
0.696
Ciclev10002183m.g
Citrus clementina
Ciclev10002183m.g
I
0.696
SapurV1A.0215s0310
Salix purpurea
SapurV1A.0215s0310
I
0.696
Pm019793
Prunus mume
Pm019793
I
0.696
MTR_3g090760
Medicago truncatula
MTR_3g090760
I
0.696
Gorai.007G105700
Gossypium raimondii
Gorai.007G105700
I
0.692
TCM_005203
Theobroma cacao
TCM_005203
I
0.692
Ca_15671
Cicer arietinum
Ca_15671
I
0.692
GLYMA03G23330
Glycine max
GLYMA03G23330
I
0.692
Solyc01g095500.2
Solanum lycopersicum
Solyc01g095500.2
I
0.691
Solyc06g082590.1
Solanum lycopersicum
Solyc06g082590.1
I
0.691
PGSC0003DMG400030472
Solanum tuberosum
PGSC0003DMG400030472
I
0.690
Bra029079
Brassica rapa
Bra029079
I
0.690
Bo3g022760
Brassica oleracea
Bo3g022760
I
0.690
Gorai.007G105600
Gossypium raimondii
Gorai.007G105600
I
0.689
GSMUA_Achr7G21980_001
Musa acuminata
GSMUA_Achr7G21980_001
I
0.689
GLYMA08G02460
Glycine max
GLYMA08G02460
I
0.689
O65242_TOBAC
Nicotiana tabacum
O65242_TOBAC
D
0.686
Gorai.001G156900
Gossypium raimondii
Gorai.001G156900
I
0.686
mgf022434m
Mimulus guttatus
mgf022434m
I
0.686
chr2.CM0060.150.nc
Lotus japonicus
chr2.CM0060.150.nc
I
0.686
CRF2
Arabidopsis thaliana
AT4G23750
D
0.685
PRUPE_ppa022995mg
Prunus persica
PRUPE_ppa022995mg
I
0.684
Pm000232
Prunus mume
Pm000232
I
0.684
mgf023807m
Mimulus guttatus
mgf023807m
I
0.684
PRUPE_ppa025495mg
Prunus persica
PRUPE_ppa025495mg
I
0.684
OBART03G38710
Oryza barthii
OBART03G38710
I
0.683
BGIOSGA009571
Oryza indica
BGIOSGA009571
I
0.683
OGLUM03G38530
Oryza glumaepatula
OGLUM03G38530
I
0.683
ORGLA03G0354400
Oryza glaberrima
ORGLA03G0354400
I
0.683
OMERI03G35630
Oryza meridionalis
OMERI03G35630
I
0.683
ORUFI03G40350
Oryza rufipogon
ORUFI03G40350
I
0.683
OS03G0815800
Oryza sativa
OS03G0815800
I
0.683
Cagra.16778s0005
Capsella grandiflora
Cagra.16778s0005
I
0.683
ONIVA03G40360
Oryza nivara
ONIVA03G40360
I
0.683
Cagra.1226s0039
Capsella grandiflora
Cagra.1226s0039
I
0.681
CRF2
Arabidopsis lyrata
fgenesh2_kg.7__1924__AT4G23750.1
I
0.681
Carubv10005160m.g
Capsella rubella
Carubv10005160m.g
I
0.681
Cucsa.107190
Cucumis sativus
Cucsa.107190
I
0.681
Bostr.7867s0178
Boechera stricta
Bostr.7867s0178
I
0.681
Cla011108
Citrullus lanatus
Cla011108
I
0.681
Pm013049
Prunus mume
Pm013049
I
0.680
OPUNC03G35790
Oryza punctata
OPUNC03G35790
I
0.680
Gorai.006G208200
Gossypium raimondii
Gorai.006G208200
I
0.679
PGSC0003DMG400000091
Solanum tuberosum
PGSC0003DMG400000091
I
0.678
MDP0000190504
Malus domestica
MDP0000190504
I
0.678
GSMUA_Achr11G19880_001
Musa acuminata
GSMUA_Achr11G19880_001
I
0.678
LjSGA_008718.1
Lotus japonicus
LjSGA_008718.1
I
0.677
SapurV1A.0013s0740
Salix purpurea
SapurV1A.0013s0740
I
0.677