GLYMA13G39540 (Glycine max)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 GLYMA13G39540 T001951_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.770 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.770 0.840
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.734 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.734 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.734 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.734 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.734 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.734 0.780
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.731 0.760
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.731 0.760
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.731 0.760
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.709 0.780
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.709 0.780
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.709 0.780
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.709 0.780
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.705 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G39540.1 AP2 45 96

Links

Other AP2 family TFs
Other Glycine max TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.838
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.801
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.799
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.799
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.787
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.786
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.782
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.782
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.782
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.778
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.778
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.773
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.773
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.773
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.773
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.770
Bo9g104770 Brassica oleracea Bo9g104770 I 0.770
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.770
DREB1D Arabidopsis thaliana AT5G51990 D 0.770
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.770
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.770
Bra028290 Brassica rapa Bra028290 I 0.770
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.770
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.769
60638.m00016 Ricinus communis 60638.m00016 I 0.766
Cla002362 Citrullus lanatus Cla002362 I 0.758
30190.m011119 Ricinus communis 30190.m011119 I 0.757
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.756
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.755
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.755
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.752
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.750
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.750
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.750
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.750
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.750
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.748
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.745
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.745
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.745
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.745
MDP0000198054 Malus domestica MDP0000198054 I 0.745
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.743
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.741
30190.m011120 Ricinus communis 30190.m011120 I 0.741
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.741
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.740
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.739
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.739
mgf026642m Mimulus guttatus mgf026642m I 0.738
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.738
Cla006315 Citrullus lanatus Cla006315 I 0.738
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.737
Cla011674 Citrullus lanatus Cla011674 I 0.737
Pm023775 Prunus mume Pm023775 I 0.736
MDP0000154764 Malus domestica MDP0000154764 I 0.736
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.736
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.736
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.735
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.735
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.734
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.734
DREB1F Arabidopsis thaliana AT1G12610 D 0.734
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.734
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.733
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.733
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.732
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.732
Bo01335s010 Brassica oleracea Bo01335s010 I 0.732
PK23332.1 Cannabis sativa PK23332.1 I 0.732
Bra016763 Brassica rapa Bra016763 I 0.732
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.732
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.732
DREB1C Arabidopsis thaliana AT4G25470 D 0.731
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.730
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.730
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.729
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.729
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.728
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.727
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.727
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.726
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.726
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.725
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.725
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.723
Bra026963 Brassica rapa Bra026963 I 0.722
Bo8g108050 Brassica oleracea Bo8g108050 I 0.722
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.721
Pm023769 Prunus mume Pm023769 I 0.721
Pm023772 Prunus mume Pm023772 I 0.721
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.719
mgf017136m Mimulus guttatus mgf017136m I 0.719
30147.m014313 Ricinus communis 30147.m014313 I 0.718
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.718
mgf026339m Mimulus guttatus mgf026339m I 0.717
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.715
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.713
TCM_016175 Theobroma cacao TCM_016175 I 0.713
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.712
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.712
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.711
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.709
DREB1A Arabidopsis thaliana AT4G25480 D 0.709
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.709
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.709
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.709
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.709
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.709
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.708
TCM_041493 Theobroma cacao TCM_041493 N 0.708
Ca_18948 Cicer arietinum Ca_18948 I 0.708
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.707
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.707
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.705
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.705
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.705
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.705
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.705
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.703
AMTR_s00040p00195730 Amborella trichopoda AMTR_s00040p00195730 I 0.703
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.703
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.703
mgf019061m Mimulus guttatus mgf019061m I 0.702
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.701
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.701
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.701
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.700
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.699
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.699
Bra027612 Brassica rapa Bra027612 I 0.698
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.698
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.697
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.697
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.696
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.695
Aquca_027_00400 Aquilegia coerulea Aquca_027_00400 N 0.695
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.693
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.692
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.692
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.692
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.685
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.685
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.684
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.684
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.683
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.682
Bo5g016750 Brassica oleracea Bo5g016750 I 0.682
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.681
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.679
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.678
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.678
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.678