CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
GLYMA16G02680
(
Glycine max
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GLYMA16G02680
T001989_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF023
M06560_2.00
Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH
Dap-seq
OMalley et al.(2016)
AT1G01250_col_a
0.787
0.900
ERF023
M06561_2.00
Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD
Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a
0.787
0.900
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA16G02680.1
AP2
36
87
PLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGR
Links
Other
AP2
family TFs
Other
Glycine max
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA07G06080
Glycine max
GLYMA07G06080
I
0.829
Ca_17638
Cicer arietinum
Ca_17638
I
0.815
mgf020568m
Mimulus guttatus
mgf020568m
I
0.814
gene19141-v1.0-hybrid
Fragaria vesca
gene19141-v1.0-hybrid
I
0.813
chr1.LjT43L07.200.nd
Lotus japonicus
chr1.LjT43L07.200.nd
I
0.813
PK15554.1
Cannabis sativa
PK15554.1
I
0.813
SapurV1A.0003s1030
Salix purpurea
SapurV1A.0003s1030
I
0.813
PRUPE_ppa026139mg
Prunus persica
PRUPE_ppa026139mg
I
0.809
Pm018354
Prunus mume
Pm018354
I
0.809
POPTR_0855s00200
Populus trichocarpa
POPTR_0855s00200
I
0.807
POPTR_0002s17320
Populus trichocarpa
POPTR_0002s17320
I
0.807
POPTR_0002s17330
Populus trichocarpa
POPTR_0002s17330
I
0.807
SapurV1A.0013s0250
Salix purpurea
SapurV1A.0013s0250
I
0.807
MTR_8g027465
Medicago truncatula
MTR_8g027465
I
0.806
GLYMA03G41910
Glycine max
GLYMA03G41910
I
0.806
29742.m001400
Ricinus communis
29742.m001400
I
0.805
POPTR_0014s09540
Populus trichocarpa
POPTR_0014s09540
I
0.805
MTR_7g117690
Medicago truncatula
MTR_7g117690
I
0.804
orange1.1g029627m.g
Citrus sinensis
orange1.1g029627m.g
I
0.803
GLYMA19G44580
Glycine max
GLYMA19G44580
I
0.803
Ciclev10022410m.g
Citrus clementina
Ciclev10022410m.g
I
0.803
Gorai.007G109400
Gossypium raimondii
Gorai.007G109400
I
0.800
TCM_005130
Theobroma cacao
TCM_005130
I
0.800
Gorai.008G126000
Gossypium raimondii
Gorai.008G126000
I
0.800
cassava43608.valid.m1
Manihot esculenta
cassava43608.valid.m1
I
0.790
ERF023
Arabidopsis thaliana
AT1G01250
D
0.787
Cagra.1968s0069
Capsella grandiflora
Cagra.1968s0069
I
0.787
fgenesh2_kg.1__103__AT1G01250.1
Arabidopsis lyrata
fgenesh2_kg.1__103__AT1G01250.1
I
0.787
Carubv10010347m.g
Capsella rubella
Carubv10010347m.g
I
0.787
Bra032630
Brassica rapa
Bra032630
I
0.783
Ca_01325
Cicer arietinum
Ca_01325
I
0.783
Bostr.5325s0047
Boechera stricta
Bostr.5325s0047
I
0.781
VIT_15s0046g00310
Vitis vinifera
VIT_15s0046g00310
I
0.779
Bo5g002600
Brassica oleracea
Bo5g002600
I
0.774
Bra033274
Brassica rapa
Bra033274
I
0.774
Thhalv10009402m.g
Eutrema salsugineum
Thhalv10009402m.g
I
0.774
Bo8g117810
Brassica oleracea
Bo8g117810
I
0.770
AMTR_s00021p00223240
Amborella trichopoda
AMTR_s00021p00223240
I
0.749
PGSC0003DMG400007036
Solanum tuberosum
PGSC0003DMG400007036
N
0.689
PGSC0003DMG400018054
Solanum tuberosum
PGSC0003DMG400018054
I
0.688
Cucsa.237150
Cucumis sativus
Cucsa.237150
I
0.682
Cla012665
Citrullus lanatus
Cla012665
I
0.682
Solyc11g042560.1
Solanum lycopersicum
Solyc11g042560.1
I
0.681
VIT_18s0001g05850
Vitis vinifera
VIT_18s0001g05850
I
0.680
gw1.155.87.1
Physcomitrella patens
gw1.155.87.1
I
0.677