CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G002119
(
Zea mays
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GRMZM2G002119
T002068_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
DISCONTINUED: This record has been withdrawn by NCBI staff. This record represented a gene that is not currently annotated by NCBI.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR
YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.740
0.894
OS05G0497200
M01636_2.00
Oryza sativa
CGSCGCCR
YGGCGSCG
PBM
Weirauch et al.(2014)
pTH8640
0.719
0.872
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR
YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.678
0.745
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.678
0.745
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.678
0.745
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G002119_P01
AP2
27
78
AHYRGVRKRPWGRYATEIRDPWKKTRVWLGTFDTPVEAALAYDCAARTLRGA
Links
Other
AP2
family TFs
Other
Zea mays
TFs
104 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G132223
Zea mays
GRMZM2G132223
I
0.767
TRAES3BF075600040CFD_g
Triticum aestivum
TRAES3BF075600040CFD_g
I
0.763
BRADI2G52380
Brachypodium distachyon
BRADI2G52380
I
0.763
Si003053m.g
Setaria italica
Si003053m.g
I
0.763
MLOC_66843
Hordeum vulgare
MLOC_66843
I
0.758
GSMUA_Achr6G01440_001
Musa acuminata
GSMUA_Achr6G01440_001
I
0.754
Pavir.Ea03148
Panicum virgatum
Pavir.Ea03148
I
0.750
GLYMA03G31640
Glycine max
GLYMA03G31640
I
0.744
Solyc02g077840.1
Solanum lycopersicum
Solyc02g077840.1
I
0.740
SapurV1A.0032s0450
Salix purpurea
SapurV1A.0032s0450
I
0.740
SapurV1A.0012s0570
Salix purpurea
SapurV1A.0012s0570
I
0.740
ERF12
Vitis vinifera
VIT_10s0003g00130
I
0.740
PK17878.1
Cannabis sativa
PK17878.1
D
0.740
PRUPE_ppa012385mg
Prunus persica
PRUPE_ppa012385mg
I
0.740
POPTR_0004s04700
Populus trichocarpa
POPTR_0004s04700
I
0.740
POPTR_0011s05570
Populus trichocarpa
POPTR_0011s05570
I
0.740
chr6.CM0114.130.nc
Lotus japonicus
chr6.CM0114.130.nc
I
0.740
Ca_00326
Cicer arietinum
Ca_00326
I
0.740
Pm010083
Prunus mume
Pm010083
I
0.740
mgf023367m
Mimulus guttatus
mgf023367m
I
0.740
Gorai.011G029700
Gossypium raimondii
Gorai.011G029700
I
0.740
Ciclev10016982m.g
Citrus clementina
Ciclev10016982m.g
I
0.740
cassava4486.m1
Manihot esculenta
cassava4486.m1
I
0.740
PGSC0003DMG400029713
Solanum tuberosum
PGSC0003DMG400029713
I
0.740
orange1.1g030994m.g
Citrus sinensis
orange1.1g030994m.g
I
0.740
30190.m011323
Ricinus communis
30190.m011323
I
0.740
cassava42971.valid.m1
Manihot esculenta
cassava42971.valid.m1
I
0.740
evm.TU.supercontig_27.18
Carica papaya
evm.TU.supercontig_27.18
I
0.740
TCM_029823
Theobroma cacao
TCM_029823
I
0.740
GLYMA15G08360
Glycine max
GLYMA15G08360
I
0.740
GLYMA13G31010
Glycine max
GLYMA13G31010
I
0.740
MTR_2g014300
Medicago truncatula
MTR_2g014300
I
0.740
GSMUA_Achr6G00240_001
Musa acuminata
GSMUA_Achr6G00240_001
I
0.739
Cla020002
Citrullus lanatus
Cla020002
I
0.737
Cucsa.126860
Cucumis sativus
Cucsa.126860
I
0.737
Pavir.Eb03165
Panicum virgatum
Pavir.Eb03165
I
0.737
chr1.CM0375.170.nd
Lotus japonicus
chr1.CM0375.170.nd
I
0.735
Aquca_036_00073
Aquilegia coerulea
Aquca_036_00073
I
0.734
PRUPE_ppa022435mg
Prunus persica
PRUPE_ppa022435mg
I
0.733
Pm020210
Prunus mume
Pm020210
I
0.733
gene29735-v1.0-hybrid
Fragaria vesca
gene29735-v1.0-hybrid
I
0.733
Aquca_017_00628
Aquilegia coerulea
Aquca_017_00628
I
0.731
POPTR_0002s04430
Populus trichocarpa
POPTR_0002s04430
I
0.731
SELMODRAFT_73142
Selaginella moellendorffii
SELMODRAFT_73142
I
0.730
SELMODRAFT_49950
Selaginella moellendorffii
SELMODRAFT_49950
I
0.730
AMTR_s00002p00264660
Amborella trichopoda
AMTR_s00002p00264660
I
0.730
e_gw1.124.59.1
Physcomitrella patens
e_gw1.124.59.1
I
0.730
Sb03g037085
Sorghum bicolor
Sb03g037085
I
0.729
estExt_gwp_gw1.C_1270048
Physcomitrella patens
estExt_gwp_gw1.C_1270048
I
0.729
VIT_14s0081g00520
Vitis vinifera
VIT_14s0081g00520
I
0.728
PK02998.1
Cannabis sativa
PK02998.1
I
0.727
Bo7g048190
Brassica oleracea
Bo7g048190
I
0.727
Bostr.15697s0156
Boechera stricta
Bostr.15697s0156
I
0.727
Bra032898
Brassica rapa
Bra032898
I
0.727
Carubv10011585m.g
Capsella rubella
Carubv10011585m.g
I
0.727
Bra030094
Brassica rapa
Bra030094
I
0.727
Bo5g055840
Brassica oleracea
Bo5g055840
I
0.727
Bra010881
Brassica rapa
Bra010881
I
0.727
ERF12
Arabidopsis thaliana
AT1G28360
I
0.727
Bo3g143340
Brassica oleracea
Bo3g143340
I
0.727
Thhalv10009947m.g
Eutrema salsugineum
Thhalv10009947m.g
I
0.727
ERF12
Arabidopsis lyrata
fgenesh2_kg.1__3004__AT1G28360.1
I
0.727
Cagra.1822s0023
Capsella grandiflora
Cagra.1822s0023
I
0.727
VIT_07s0141g00690
Vitis vinifera
VIT_07s0141g00690
I
0.726
GSMUA_Achr3G29290_001
Musa acuminata
GSMUA_Achr3G29290_001
I
0.725
GSMUA_Achr4G06660_001
Musa acuminata
GSMUA_Achr4G06660_001
I
0.724
GSMUA_Achr5G09940_001
Musa acuminata
GSMUA_Achr5G09940_001
I
0.724
Ca_12205
Cicer arietinum
Ca_12205
I
0.722
SELMODRAFT_443461
Selaginella moellendorffii
SELMODRAFT_443461
I
0.721
OGLUM05G22780
Oryza glumaepatula
OGLUM05G22780
I
0.719
POPTR_0005s24110
Populus trichocarpa
POPTR_0005s24110
I
0.719
OMERI05G19480
Oryza meridionalis
OMERI05G19480
I
0.719
BGIOSGA017797
Oryza indica
BGIOSGA017797
I
0.719
OS05G0497200
Oryza sativa
OS05G0497200
D
0.719
ONIVA05G22260
Oryza nivara
ONIVA05G22260
I
0.719
OPUNC05G19220
Oryza punctata
OPUNC05G19220
I
0.719
ORGLA05G0187500
Oryza glaberrima
ORGLA05G0187500
I
0.719
ORUFI05G22840
Oryza rufipogon
ORUFI05G22840
I
0.719
LPERR05G17470
Leersia perrieri
LPERR05G17470
I
0.719
SELMODRAFT_430375
Selaginella moellendorffii
SELMODRAFT_430375
I
0.717
gene21403-v1.0-hybrid
Fragaria vesca
gene21403-v1.0-hybrid
I
0.716
GSMUA_AchrUn_randomG06910_001
Musa acuminata
GSMUA_AchrUn_randomG06910_001
I
0.707
gw1.90.191.1
Physcomitrella patens
gw1.90.191.1
I
0.705
SELMODRAFT_59974
Selaginella moellendorffii
SELMODRAFT_59974
I
0.705
VIT_19s0090g01080
Vitis vinifera
VIT_19s0090g01080
I
0.703
Cucsa.139820
Cucumis sativus
Cucsa.139820
I
0.702
MDP0000457509
Malus domestica
MDP0000457509
I
0.701
MDP0000236605
Malus domestica
MDP0000236605
I
0.701
MDP0000310904
Malus domestica
MDP0000310904
I
0.701
TCM_030804
Theobroma cacao
TCM_030804
I
0.695
GSMUA_Achr8G15820_001
Musa acuminata
GSMUA_Achr8G15820_001
I
0.693
Cla013723
Citrullus lanatus
Cla013723
I
0.692
ERF3
Arabidopsis lyrata
fgenesh2_kg.1__4150__AT1G50640.1
I
0.690
Gorai.002G092900
Gossypium raimondii
Gorai.002G092900
I
0.690
Bostr.26675s0113
Boechera stricta
Bostr.26675s0113
I
0.690
e_gw1.487.2.1
Physcomitrella patens
e_gw1.487.2.1
I
0.689
Thhalv10011689m.g
Eutrema salsugineum
Thhalv10011689m.g
I
0.682
SELMODRAFT_19889
Selaginella moellendorffii
SELMODRAFT_19889
I
0.680
SapurV1A.0118s0170
Salix purpurea
SapurV1A.0118s0170
I
0.680
Cagra.0952s0001
Capsella grandiflora
Cagra.0952s0001
I
0.680
Carubv10010284m.g
Capsella rubella
Carubv10010284m.g
I
0.680
PRUPE_ppa010090mg
Prunus persica
PRUPE_ppa010090mg
I
0.678
ERF3
Arabidopsis thaliana
AT1G50640
D
0.678
Gorai.009G443400
Gossypium raimondii
Gorai.009G443400
I
0.678