CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G416701
(
Zea mays
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GRMZM2G416701
T002235_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TOE2
M00851_2.00
Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN
PBM
Franco-Zorrilla et al.(2014)
TOE2
0.863
0.979
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD
HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.811
0.905
SMZ
M08402_2.00
Arabidopsis thaliana
YCTCGTAC
GTACGAGR
ChIP-chip
Mathelier et al.(2014)
MA0553.1
0.854
0.979
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.803
0.884
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.787
0.874
P93632_MAIZE
M09712_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.757
0.768
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G416701_P01
AP2
152
201
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
GRMZM2G416701_P01
AP2
244
292
SKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARVEYRLDIRF
GRMZM2G416701_P02
AP2
152
201
SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG
Links
Other
AP2
family TFs
Other
Zea mays
TFs
280 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy