CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr10G09150_001
(
Musa acuminata
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GSMUA_Achr10G09150_001
T002270_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.805
0.826
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD
HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.805
0.826
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.803
0.826
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.801
0.848
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.801
0.848
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC
GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.786
0.826
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.786
0.826
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.786
0.826
ERF8
M01608_2.00
Arabidopsis thaliana
MGCCGNMNNN
NNNKNCGGCK
PBM
Weirauch et al.(2014)
pTH8095
0.755
0.804
ERF8
M06586_2.00
Arabidopsis thaliana
NYHDYCKCCGCCGYH
DRCGGCGGMGRHDRN
Dap-seq
OMalley et al.(2016)
ERF8_col_a
0.755
0.804
ERF8
M06587_2.00
Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN
NHDDYGRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ERF8_colamp_a
0.755
0.804
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.716
0.739
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.716
0.739
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.716
0.739
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN
NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.704
0.739
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN
NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.704
0.739
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN
NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.704
0.739
LEP
M06661_2.00
Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN
Dap-seq
OMalley et al.(2016)
LEP_col_a
0.703
0.739
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR
YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.696
0.696
RAP2-3
M01050_2.00
Arabidopsis thaliana
CGCCGCCR
YGGCGGCG
PBM
Sullivan et al.(2014)
pTH8811
0.693
0.674
RAP2-3
M00847_2.00
Arabidopsis thaliana
NMGCCGCCDN
NHGGCGGCKN
PBM
Franco-Zorrilla et al.(2014)
RAP2.3
0.693
0.674
ERF11
M01606_2.00
Arabidopsis thaliana
NHGCCGNHNN
NNDNCGGCDN
PBM
Weirauch et al.(2014)
pTH8117
0.691
0.717
ERF11
M06575_2.00
Arabidopsis thaliana
NHNNHDSCGCCGYCRHHNNN
NNNDDYGRCGGCGSHDNNDN
Dap-seq
OMalley et al.(2016)
ERF11_colamp_a
0.691
0.717
ERF11
M06576_2.00
Arabidopsis thaliana
NHNYCKCCGCCGYHD
HDRCGGCGGMGRNDN
Dap-seq
OMalley et al.(2016)
ERF11_col_b
0.691
0.717
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.691
0.696
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.689
0.717
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.689
0.717
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.688
0.717
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.686
0.674
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.685
0.717
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.685
0.717
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.681
0.739
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.681
0.739
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.681
0.739
EREBP1
M09708_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.680
0.696
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM
KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.679
0.717
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.679
0.717
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.679
0.717
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.678
0.652
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr10P09150_001
AP2
18
65
AHFRGVRKRPWGRYAAEIRDPNKKSRIWLGTFGTAEEAARAYDAAARD
Links
Other
AP2
family TFs
Other
Musa acuminata
TFs
932 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy