CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr10G31090_001
(
Musa acuminata
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GSMUA_Achr10G31090_001
T002293_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HRE1
M06595_2.00
Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHKVNDN
Dap-seq
OMalley et al.(2016)
ERF73_col_a
0.787
0.857
HRE1
M06596_2.00
Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY
RYGGCGGCGGHGRNDKHDRND
Dap-seq
OMalley et al.(2016)
ERF73_colamp_a
0.787
0.857
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.764
0.816
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.749
0.816
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.749
0.816
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.748
0.857
EREBP1
M09708_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.748
0.857
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN
NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.728
0.796
RAP2-3
M01050_2.00
Arabidopsis thaliana
CGCCGCCR
YGGCGGCG
PBM
Sullivan et al.(2014)
pTH8811
0.722
0.796
RAP2-3
M00847_2.00
Arabidopsis thaliana
NMGCCGCCDN
NHGGCGGCKN
PBM
Franco-Zorrilla et al.(2014)
RAP2.3
0.722
0.796
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN
NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.713
0.714
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN
NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.713
0.714
ERF091
M06638_2.00
Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN
Dap-seq
OMalley et al.(2016)
AT4G18450_col_a
0.712
0.735
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC
GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.712
0.714
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.712
0.714
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.712
0.714
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.709
0.714
LEP
M06661_2.00
Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN
Dap-seq
OMalley et al.(2016)
LEP_col_a
0.707
0.653
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM
KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.704
0.714
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.704
0.714
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.704
0.714
O65242_TOBAC
M09730_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.703
0.653
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.702
0.673
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.702
0.673
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.696
0.673
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD
HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.696
0.673
0100010458
M01644_2.00
Ostreococcus tauri
MGCCGSCR
YGSCGGCK
PBM
Weirauch et al.(2014)
pTH9447
0.695
0.714
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.693
0.673
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.693
0.694
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.693
0.694
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD
HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.693
0.694
ERF1B
M09703_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.693
0.694
ERF1B
M09704_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.693
0.694
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.692
0.653
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.687
0.633
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.687
0.633
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN
NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.685
0.735
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.682
0.673
ERF8
M01608_2.00
Arabidopsis thaliana
MGCCGNMNNN
NNNKNCGGCK
PBM
Weirauch et al.(2014)
pTH8095
0.682
0.694
ERF8
M06586_2.00
Arabidopsis thaliana
NYHDYCKCCGCCGYH
DRCGGCGGMGRHDRN
Dap-seq
OMalley et al.(2016)
ERF8_col_a
0.682
0.694
ERF8
M06587_2.00
Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN
NHDDYGRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ERF8_colamp_a
0.682
0.694
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.679
0.714
Q84J59_MAIZE
M09717_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.678
0.592
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr10P31090_001
AP2
91
142
NRYRGIRRRPWGKWAAEIRDPCKGVRVWLGTFNTAEEAARAYDAEARKIRGK
Links
Other
AP2
family TFs
Other
Musa acuminata
TFs
1539 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy