GSMUA_Achr5G12530_001 (Musa acuminata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 GSMUA_Achr5G12530_001 T002399_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.761 0.898
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.761 0.898
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.743 0.878
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.743 0.878
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.743 0.878
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.732 0.755
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD

HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.731 0.776
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH

DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.731 0.776
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD

HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.730 0.796
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD

HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.730 0.796
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN

NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.730 0.796
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN

NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.722 0.857
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN

NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.722 0.857
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD

HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.722 0.857
ERF1B
M09703_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.722 0.857
ERF1B
M09704_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.722 0.857
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN

NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.714 0.755
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.699 0.837
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.681 0.714
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.679 0.714
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.678 0.714
P93392_TOBAC
M09731_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$OPBP1_01
0.677 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr5P12530_001 AP2 102 154

Links

Other AP2 family TFs
Other Musa acuminata TFs

915 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF021 Arabidopsis thaliana AT1G71450 D 0.000
Si026882m.g Setaria italica Si026882m.g I 0.000
27805.m000021 Ricinus communis 27805.m000021 I 0.000
28118.m000034 Ricinus communis 28118.m000034 I 0.000
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.000
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.000
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.000
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.000
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.000
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.000
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.000
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.000
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.000
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.000
Pm004272 Prunus mume Pm004272 I 0.000
Pm004269 Prunus mume Pm004269 I 0.000
Cla012661 Citrullus lanatus Cla012661 I 0.000
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.000
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.000
TCM_036269 Theobroma cacao TCM_036269 I 0.000
TCM_036270 Theobroma cacao TCM_036270 I 0.000
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.000
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.000
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.000
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.000
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.000
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.000
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.000
Ca_15064 Cicer arietinum Ca_15064 I 0.000
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.000
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.000
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.000
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.000
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.000
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.000
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.000
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.000
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.000
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.000
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.000
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.000
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.000
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.000
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.000
MDP0000283350 Malus domestica MDP0000283350 I 0.000
MDP0000151428 Malus domestica MDP0000151428 I 0.000
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.000
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.000
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.000
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.000
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.000
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.000
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.000
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.000
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.000
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.000
MDP0000122739 Malus domestica MDP0000122739 I 0.000
MDP0000122740 Malus domestica MDP0000122740 I 0.000
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.000
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.000
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.000
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.000
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.000
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.000
GLYMA11G03790 Glycine max GLYMA11G03790 I 0.000
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.000
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.000
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.000
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.000
OB11G16300 Oryza brachyantha OB11G16300 I 0.000
F775_17299 Aegilops tauschii F775_17299 I 0.000
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.000
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.000
ERF022 Arabidopsis thaliana AT1G33760 I 0.000
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.000
Bo2g072910 Brassica oleracea Bo2g072910 I 0.000
Bo5g086680 Brassica oleracea Bo5g086680 I 0.000
Bo6g046850 Brassica oleracea Bo6g046850 I 0.000
Bo8g027240 Brassica oleracea Bo8g027240 I 0.000
Bra010210 Brassica rapa Bra010210 I 0.000
Bra016136 Brassica rapa Bra016136 I 0.000
Bra028009 Brassica rapa Bra028009 I 0.000
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.000
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.000
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.000
OS11G0242300 Oryza sativa OS11G0242300 I 0.000
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.000
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.000
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.000
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.000
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.000
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.000
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.000
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.000
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.000
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.000
Cla012665 Citrullus lanatus Cla012665 I 0.000
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.000
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.000
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.000
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.000
BRADI3G45997 Brachypodium distachyon BRADI3G45997 N 0.000
BGIOSGA006249 Oryza indica BGIOSGA006249 N 0.000
OS02G0558700 Oryza sativa OS02G0558700 N 0.000
ORUFI04G15010 Oryza rufipogon ORUFI04G15010 N 0.000
OMERI02G20440 Oryza meridionalis OMERI02G20440 N 0.000
ONIVA02G22690 Oryza nivara ONIVA02G22690 N 0.000
OGLUM02G20980 Oryza glumaepatula OGLUM02G20980 N 0.000
OB02G28310 Oryza brachyantha OB02G28310 N 0.000
OPUNC02G18630 Oryza punctata OPUNC02G18630 N 0.000
OPUNC04G11630 Oryza punctata OPUNC04G11630 N 0.000
LPERR04G10650 Leersia perrieri LPERR04G10650 N 0.000
LPERR02G16700 Leersia perrieri LPERR02G16700 N 0.000
ONIVA04G11950 Oryza nivara ONIVA04G11950 N 0.000
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.000
ORGLA04G0108200 Oryza glaberrima ORGLA04G0108200 N 0.000
ORUFI02G21740 Oryza rufipogon ORUFI02G21740 N 0.000
OMERI04G12360 Oryza meridionalis OMERI04G12360 N 0.000