CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr6G26280_001
(
Musa acuminata
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GSMUA_Achr6G26280_001
T002429_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q8LKX0_MAIZE
M09722_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.720
0.820
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.702
0.820
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.702
0.820
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA
TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.685
0.800
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.685
0.800
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.685
0.800
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.680
0.800
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.680
0.800
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr6P26280_001
AP2
59
110
PVYHGVRMRAWGKWVSEIRQPRKKSRIWLGTFATPEMAARAHDAAALCVKGH
Links
Other
AP2
family TFs
Other
Musa acuminata
TFs
244 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GSMUA_Achr9G05860_001
Musa acuminata
GSMUA_Achr9G05860_001
I
0.781
GSMUA_Achr2G09430_001
Musa acuminata
GSMUA_Achr2G09430_001
I
0.751
mgf022802m
Mimulus guttatus
mgf022802m
I
0.746
GLYMA08G03910
Glycine max
GLYMA08G03910
I
0.744
MTR_8g102800
Medicago truncatula
MTR_8g102800
I
0.744
Ca_05941
Cicer arietinum
Ca_05941
I
0.744
GLYMA05G35741
Glycine max
GLYMA05G35741
I
0.741
chr4.CM0617.510.nd
Lotus japonicus
chr4.CM0617.510.nd
I
0.741
Eucgr.C03785
Eucalyptus grandis
Eucgr.C03785
I
0.740
MTR_2g101340
Medicago truncatula
MTR_2g101340
I
0.738
mgf019024m
Mimulus guttatus
mgf019024m
I
0.737
Cla004187
Citrullus lanatus
Cla004187
I
0.737
evm.TU.supercontig_109.32
Carica papaya
evm.TU.supercontig_109.32
I
0.737
GRMZM5G816314
Zea mays
GRMZM5G816314
I
0.736
Si017865m.g
Setaria italica
Si017865m.g
I
0.736
Gorai.004G281600
Gossypium raimondii
Gorai.004G281600
I
0.736
Sb04g032940
Sorghum bicolor
Sb04g032940
I
0.736
GRMZM2G072926
Zea mays
GRMZM2G072926
I
0.736
Cucsa.235510
Cucumis sativus
Cucsa.235510
I
0.734
Ciclev10009138m.g
Citrus clementina
Ciclev10009138m.g
I
0.734
orange1.1g041119m.g
Citrus sinensis
orange1.1g041119m.g
I
0.734
gene11882-v1.0-hybrid
Fragaria vesca
gene11882-v1.0-hybrid
I
0.731
Gorai.001G008100
Gossypium raimondii
Gorai.001G008100
I
0.731
Gorai.010G075300
Gossypium raimondii
Gorai.010G075300
I
0.731
Traes_1AL_88D49649D
Triticum aestivum
Traes_1AL_88D49649D
I
0.730
Traes_1BL_E39CD252E
Triticum aestivum
Traes_1BL_E39CD252E
I
0.730
F775_11989
Aegilops tauschii
F775_11989
I
0.730
POPTR_0003s04920
Populus trichocarpa
POPTR_0003s04920
I
0.729
GRMZM2G073047
Zea mays
GRMZM2G073047
I
0.729
GRMZM5G806839
Zea mays
GRMZM5G806839
I
0.728
Traes_7DL_538583735
Triticum aestivum
Traes_7DL_538583735
I
0.727
ONIVA06G21640
Oryza nivara
ONIVA06G21640
I
0.727
ORUFI06G19350
Oryza rufipogon
ORUFI06G19350
I
0.727
Si007144m.g
Setaria italica
Si007144m.g
I
0.727
F775_14820
Aegilops tauschii
F775_14820
I
0.727
BRADI1G38110
Brachypodium distachyon
BRADI1G38110
I
0.727
OMERI06G18780
Oryza meridionalis
OMERI06G18780
I
0.727
OGLUM10G18570
Oryza glumaepatula
OGLUM10G18570
I
0.726
OPUNC10G16830
Oryza punctata
OPUNC10G16830
I
0.726
ONIVA10G21000
Oryza nivara
ONIVA10G21000
I
0.726
OMERI08G00520
Oryza meridionalis
OMERI08G00520
I
0.726
MTR_7g046260
Medicago truncatula
MTR_7g046260
I
0.726
ORGLA10G0136200
Oryza glaberrima
ORGLA10G0136200
I
0.726
Cucsa.312570
Cucumis sativus
Cucsa.312570
I
0.725
GLYMA01G13410
Glycine max
GLYMA01G13410
I
0.723
Cla017050
Citrullus lanatus
Cla017050
I
0.722
Cucsa.116550
Cucumis sativus
Cucsa.116550
I
0.722
ORGLA02G0087100
Oryza glaberrima
ORGLA02G0087100
I
0.721
OPUNC02G08670
Oryza punctata
OPUNC02G08670
I
0.721
Si018188m.g
Setaria italica
Si018188m.g
I
0.721
OGLUM02G09810
Oryza glumaepatula
OGLUM02G09810
I
0.721
OMERI02G10950
Oryza meridionalis
OMERI02G10950
I
0.721
Pavir.Da00839
Panicum virgatum
Pavir.Da00839
I
0.721
Cla023465
Citrullus lanatus
Cla023465
I
0.721
GRMZM2G047918
Zea mays
GRMZM2G047918
I
0.721
Pavir.Ab00844
Panicum virgatum
Pavir.Ab00844
I
0.721
BRADI3G08790
Brachypodium distachyon
BRADI3G08790
I
0.721
LPERR06G15020
Leersia perrieri
LPERR06G15020
I
0.721
ORUFI02G09750
Oryza rufipogon
ORUFI02G09750
I
0.721
ONIVA02G10590
Oryza nivara
ONIVA02G10590
I
0.721
Sb01g029065
Sorghum bicolor
Sb01g029065
I
0.720
Q8LKX0_MAIZE
Zea mays
Q8LKX0_MAIZE
D
0.720
MLOC_17203
Hordeum vulgare
MLOC_17203
I
0.720
GRMZM5G889719
Zea mays
GRMZM5G889719
I
0.720
BRADI5G17640
Brachypodium distachyon
BRADI5G17640
I
0.720
BRADI3G33355
Brachypodium distachyon
BRADI3G33355
I
0.720
Pavir.Ia02208
Panicum virgatum
Pavir.Ia02208
I
0.720
Si039427m.g
Setaria italica
Si039427m.g
I
0.720
BRADI2G06180
Brachypodium distachyon
BRADI2G06180
I
0.718
Bra027177
Brassica rapa
Bra027177
I
0.718
GRMZM2G005301
Zea mays
GRMZM2G005301
I
0.718
Bo5g126280
Brassica oleracea
Bo5g126280
I
0.718
Traes_2BL_FC0F8A3DC
Triticum aestivum
Traes_2BL_FC0F8A3DC
I
0.717
Traes_2DL_A336122501
Triticum aestivum
Traes_2DL_A336122501
I
0.717
Traes_2AL_43491B9E0
Triticum aestivum
Traes_2AL_43491B9E0
I
0.717
F775_04501
Aegilops tauschii
F775_04501
I
0.717
OB06G25840
Oryza brachyantha
OB06G25840
I
0.716
Pavir.Ab02603
Panicum virgatum
Pavir.Ab02603
I
0.716
GRMZM2G041839
Zea mays
GRMZM2G041839
I
0.716
GRMZM2G048621
Zea mays
GRMZM2G048621
I
0.716
Si019772m.g
Setaria italica
Si019772m.g
I
0.716
Pavir.Aa00833
Panicum virgatum
Pavir.Aa00833
I
0.716
Cagra.6624s0013
Capsella grandiflora
Cagra.6624s0013
I
0.715
Carubv10014506m.g
Capsella rubella
Carubv10014506m.g
I
0.715
GSMUA_Achr10G14070_001
Musa acuminata
GSMUA_Achr10G14070_001
I
0.715
Thhalv10022278m.g
Eutrema salsugineum
Thhalv10022278m.g
I
0.715
scaffold_301905.1
Arabidopsis lyrata
scaffold_301905.1
I
0.715
LPERR10G14320
Leersia perrieri
LPERR10G14320
I
0.714
Solyc12g044390.1
Solanum lycopersicum
Solyc12g044390.1
I
0.711
PGSC0003DMG400026461
Solanum tuberosum
PGSC0003DMG400026461
I
0.711
PRUPE_ppa010130mg
Prunus persica
PRUPE_ppa010130mg
I
0.709
Pm027339
Prunus mume
Pm027339
I
0.709
mgf024816m
Mimulus guttatus
mgf024816m
I
0.708
PGSC0003DMG400000365
Solanum tuberosum
PGSC0003DMG400000365
I
0.707
Solyc12g008350.1
Solanum lycopersicum
Solyc12g008350.1
I
0.707
Gorai.003G063500
Gossypium raimondii
Gorai.003G063500
I
0.706
AC187157.4_FG001
Zea mays
AC187157.4_FG001
I
0.705
Gorai.006G097000
Gossypium raimondii
Gorai.006G097000
I
0.703
Cla015715
Citrullus lanatus
Cla015715
I
0.702
AT3G16280
Arabidopsis thaliana
AT3G16280
D
0.702
LjSGA_100683.2.1
Lotus japonicus
LjSGA_100683.2.1
I
0.701
SapurV1A.0805s0100
Salix purpurea
SapurV1A.0805s0100
I
0.701
POPTR_0001s18800
Populus trichocarpa
POPTR_0001s18800
I
0.701
Pm013463
Prunus mume
Pm013463
I
0.701
OS04G0550200
Oryza sativa
OS04G0550200
I
0.700
Si012254m.g
Setaria italica
Si012254m.g
I
0.700
Traes_6DL_3019F176A
Triticum aestivum
Traes_6DL_3019F176A
I
0.700
OMERI04G17290
Oryza meridionalis
OMERI04G17290
I
0.700
OMERI02G25910
Oryza meridionalis
OMERI02G25910
I
0.700
ONIVA02G28990
Oryza nivara
ONIVA02G28990
I
0.700
ONIVA04G19090
Oryza nivara
ONIVA04G19090
I
0.700
BGIOSGA016884
Oryza indica
BGIOSGA016884
I
0.700
OGLUM04G20790
Oryza glumaepatula
OGLUM04G20790
I
0.700
MTR_6g088425
Medicago truncatula
MTR_6g088425
I
0.700
Pavir.Gb01128
Panicum virgatum
Pavir.Gb01128
I
0.700
OGLUM02G27070
Oryza glumaepatula
OGLUM02G27070
I
0.700
MLOC_3095
Hordeum vulgare
MLOC_3095
I
0.700
OPUNC02G24230
Oryza punctata
OPUNC02G24230
I
0.700
Pavir.Ga01093
Panicum virgatum
Pavir.Ga01093
I
0.700
ORUFI04G22430
Oryza rufipogon
ORUFI04G22430
I
0.700
Pavir.Ga01094
Panicum virgatum
Pavir.Ga01094
I
0.700
ORUFI02G28010
Oryza rufipogon
ORUFI02G28010
I
0.700
ORGLA04G0179000
Oryza glaberrima
ORGLA04G0179000
I
0.700
OPUNC04G18530
Oryza punctata
OPUNC04G18530
I
0.700
LPERR02G21590
Leersia perrieri
LPERR02G21590
I
0.700
PK01156.1
Cannabis sativa
PK01156.1
I
0.700
OS02G0657000
Oryza sativa
OS02G0657000
I
0.700
Cucsa.121080
Cucumis sativus
Cucsa.121080
I
0.699
Ca_17883
Cicer arietinum
Ca_17883
I
0.699
SapurV1A.2848s0020
Salix purpurea
SapurV1A.2848s0020
I
0.698
BRADI3G50630
Brachypodium distachyon
BRADI3G50630
I
0.698
SapurV1A.0370s0130
Salix purpurea
SapurV1A.0370s0130
I
0.698
GRMZM2G172936
Zea mays
GRMZM2G172936
I
0.698
LPERR04G16900
Leersia perrieri
LPERR04G16900
I
0.698
GRMZM2G028969
Zea mays
GRMZM2G028969
I
0.697
Lus10043240.g
Linum usitatissimum
Lus10043240.g
I
0.696
Ca_14911
Cicer arietinum
Ca_14911
I
0.696
Lus10011123.g
Linum usitatissimum
Lus10011123.g
I
0.696
Lus10034949.g
Linum usitatissimum
Lus10034949.g
I
0.696
Gorai.009G050200
Gossypium raimondii
Gorai.009G050200
I
0.695
PRUPE_ppa011735mg
Prunus persica
PRUPE_ppa011735mg
I
0.695
evm.TU.supercontig_40.39
Carica papaya
evm.TU.supercontig_40.39
I
0.695
cassava15622.m1
Manihot esculenta
cassava15622.m1
I
0.695
MTR_1g006660
Medicago truncatula
MTR_1g006660
I
0.694
orange1.1g038538m.g
Citrus sinensis
orange1.1g038538m.g
I
0.693
Ciclev10027587m.g
Citrus clementina
Ciclev10027587m.g
I
0.693
Ciclev10006536m.g
Citrus clementina
Ciclev10006536m.g
I
0.693
Eucgr.F03062
Eucalyptus grandis
Eucgr.F03062
I
0.693
orange1.1g041015m.g
Citrus sinensis
orange1.1g041015m.g
I
0.693
Pavir.Aa00834
Panicum virgatum
Pavir.Aa00834
I
0.693
Pavir.Eb00249
Panicum virgatum
Pavir.Eb00249
I
0.693
Sb03g002630
Sorghum bicolor
Sb03g002630
I
0.693
Bra037041
Brassica rapa
Bra037041
I
0.693
Bo1g009990
Brassica oleracea
Bo1g009990
I
0.693
OPUNC06G16400
Oryza punctata
OPUNC06G16400
I
0.693
TCM_028851
Theobroma cacao
TCM_028851
I
0.693
Bra011383
Brassica rapa
Bra011383
I
0.693
Si002749m.g
Setaria italica
Si002749m.g
I
0.693
Thhalv10026204m.g
Eutrema salsugineum
Thhalv10026204m.g
I
0.692
Bra034535
Brassica rapa
Bra034535
I
0.692
mgf022971m
Mimulus guttatus
mgf022971m
I
0.692
Bo7g115860
Brassica oleracea
Bo7g115860
I
0.692
TRAES3BF073700060CFD_g
Triticum aestivum
TRAES3BF073700060CFD_g
I
0.692
Bo3g171090
Brassica oleracea
Bo3g171090
I
0.692
Bostr.28625s0062
Boechera stricta
Bostr.28625s0062
I
0.690
OBART01G06440
Oryza barthii
OBART01G06440
I
0.690
MDP0000652413
Malus domestica
MDP0000652413
I
0.690
OMERI01G06530
Oryza meridionalis
OMERI01G06530
I
0.690
OGLUM01G07430
Oryza glumaepatula
OGLUM01G07430
I
0.690
OPUNC01G06210
Oryza punctata
OPUNC01G06210
I
0.690
VIT_11s0016g03350
Vitis vinifera
VIT_11s0016g03350
I
0.690
ORUFI01G06970
Oryza rufipogon
ORUFI01G06970
I
0.690
ORGLA01G0061000
Oryza glaberrima
ORGLA01G0061000
I
0.690
OS01G0200600
Oryza sativa
OS01G0200600
I
0.690
Aquca_011_00566
Aquilegia coerulea
Aquca_011_00566
I
0.690
Solyc06g066540.1
Solanum lycopersicum
Solyc06g066540.1
I
0.689
GLYMA01G35010
Glycine max
GLYMA01G35010
I
0.688
Pavir.Ab02601
Panicum virgatum
Pavir.Ab02601
I
0.688
GLYMA09G32730
Glycine max
GLYMA09G32730
I
0.688
30146.m003535
Ricinus communis
30146.m003535
I
0.688
OBART02G09680
Oryza barthii
OBART02G09680
I
0.686
ERF043
Arabidopsis thaliana
AT4G32800
D
0.685
orange1.1g023148m.g
Citrus sinensis
orange1.1g023148m.g
I
0.685
Carubv10006567m.g
Capsella rubella
Carubv10006567m.g
I
0.685
Ciclev10024602m.g
Citrus clementina
Ciclev10024602m.g
I
0.685
scaffold_700899.1
Arabidopsis lyrata
scaffold_700899.1
I
0.685
Bostr.7867s1130
Boechera stricta
Bostr.7867s1130
I
0.685
Cagra.4093s0009
Capsella grandiflora
Cagra.4093s0009
I
0.685
chr1.CM0206.1000.nd
Lotus japonicus
chr1.CM0206.1000.nd
I
0.684
PK29340.1
Cannabis sativa
PK29340.1
I
0.683
ONIVA01G08000
Oryza nivara
ONIVA01G08000
I
0.683
POPTR_0006s17670
Populus trichocarpa
POPTR_0006s17670
I
0.683
Lus10001601.g
Linum usitatissimum
Lus10001601.g
I
0.683
cassava11373.m1
Manihot esculenta
cassava11373.m1
I
0.683
TCM_037811
Theobroma cacao
TCM_037811
I
0.683
BGIOSGA002184
Oryza indica
BGIOSGA002184
I
0.683
cassava10514.m1
Manihot esculenta
cassava10514.m1
I
0.683
29912.m005463
Ricinus communis
29912.m005463
I
0.683
POPTR_0018s09270
Populus trichocarpa
POPTR_0018s09270
I
0.683
Lus10002801.g
Linum usitatissimum
Lus10002801.g
I
0.683
30174.m008790
Ricinus communis
30174.m008790
I
0.683
TCM_005639
Theobroma cacao
TCM_005639
I
0.682
GLYMA15G02130
Glycine max
GLYMA15G02130
I
0.682
BGIOSGA016883
Oryza indica
BGIOSGA016883
I
0.681
SapurV1A.0540s0020
Salix purpurea
SapurV1A.0540s0020
I
0.681
Lus10038607.g
Linum usitatissimum
Lus10038607.g
I
0.681
SapurV1A.0033s0230
Salix purpurea
SapurV1A.0033s0230
I
0.681
OBART04G20820
Oryza barthii
OBART04G20820
I
0.681
OPUNC04G18520
Oryza punctata
OPUNC04G18520
I
0.681
cassava29917.valid.m1
Manihot esculenta
cassava29917.valid.m1
I
0.681
ORUFI04G22410
Oryza rufipogon
ORUFI04G22410
I
0.681
OS04G0549800
Oryza sativa
OS04G0549800
I
0.681
OGLUM04G20760
Oryza glumaepatula
OGLUM04G20760
I
0.681
ONIVA04G19060
Oryza nivara
ONIVA04G19060
I
0.681
ORGLA04G0178700
Oryza glaberrima
ORGLA04G0178700
I
0.681
OMERI04G17270
Oryza meridionalis
OMERI04G17270
I
0.681
cassava17387.m1
Manihot esculenta
cassava17387.m1
I
0.681
Gorai.004G289800
Gossypium raimondii
Gorai.004G289800
I
0.681
Bostr.25993s0277
Boechera stricta
Bostr.25993s0277
I
0.680
POPTR_0002s14210
Populus trichocarpa
POPTR_0002s14210
I
0.680
Pm017610
Prunus mume
Pm017610
I
0.680
Cagra.0239s0048
Capsella grandiflora
Cagra.0239s0048
I
0.680
Thhalv10001792m.g
Eutrema salsugineum
Thhalv10001792m.g
I
0.680
Bo2g010530
Brassica oleracea
Bo2g010530
I
0.680
PRUPE_ppa009812mg
Prunus persica
PRUPE_ppa009812mg
I
0.680
fgenesh2_kg.4__2683__AT2G44940.1
Arabidopsis lyrata
fgenesh2_kg.4__2683__AT2G44940.1
I
0.680
ERF034
Arabidopsis thaliana
AT2G44940
D
0.680
MTR_6g088405
Medicago truncatula
MTR_6g088405
I
0.680
LjSGA_095655.1
Lotus japonicus
LjSGA_095655.1
I
0.680
Carubv10023699m.g
Capsella rubella
Carubv10023699m.g
I
0.680
Gorai.007G087100
Gossypium raimondii
Gorai.007G087100
I
0.679
cassava19912.m1
Manihot esculenta
cassava19912.m1
I
0.679
cassava19875.m1
Manihot esculenta
cassava19875.m1
I
0.679
GLYMA13G43210
Glycine max
GLYMA13G43210
I
0.679
Bra015686
Brassica rapa
Bra015686
I
0.679
Solyc08g078410.1
Solanum lycopersicum
Solyc08g078410.1
I
0.679
Solyc08g078420.1
Solanum lycopersicum
Solyc08g078420.1
I
0.679
PGSC0003DMG400004825
Solanum tuberosum
PGSC0003DMG400004825
I
0.679
Bra023332
Brassica rapa
Bra023332
I
0.678
Gorai.004G165300
Gossypium raimondii
Gorai.004G165300
I
0.678
ORUFI10G19670
Oryza rufipogon
ORUFI10G19670
I
0.678
MDP0000148178
Malus domestica
MDP0000148178
I
0.677
VIT_09s0002g03940
Vitis vinifera
VIT_09s0002g03940
I
0.677
Solyc03g120840.1
Solanum lycopersicum
Solyc03g120840.1
I
0.677