CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LPERR09G02840
(
Leersia perrieri
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
LPERR09G02840
T002649_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.681
0.755
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.681
0.755
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN
NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.680
0.755
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.680
0.612
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.680
0.612
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.680
0.612
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LPERR09G02840.1
AP2
85
136
NEYHGIRKRPWGKWASEIRDPVMGVRLWLGTFDTAEDAARAYDAEARRIHGR
Links
Other
AP2
family TFs
Other
Leersia perrieri
TFs
227 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LPERR09G02820
Leersia perrieri
LPERR09G02820
I
0.775
OB09G12530
Oryza brachyantha
OB09G12530
I
0.744
F775_32653
Aegilops tauschii
F775_32653
I
0.740
MLOC_13305
Hordeum vulgare
MLOC_13305
I
0.740
Traes_4AS_094442636
Triticum aestivum
Traes_4AS_094442636
I
0.738
Bo6g091540
Brassica oleracea
Bo6g091540
I
0.735
Bra003883
Brassica rapa
Bra003883
I
0.735
Sb01g045060
Sorghum bicolor
Sb01g045060
I
0.730
Bo6g115850
Brassica oleracea
Bo6g115850
I
0.727
Bra016063
Brassica rapa
Bra016063
I
0.727
Solyc12g049560.1
Solanum lycopersicum
Solyc12g049560.1
I
0.726
PGSC0003DMG400028853
Solanum tuberosum
PGSC0003DMG400028853
I
0.726
Si036615m.g
Setaria italica
Si036615m.g
I
0.725
LPERR09G02880
Leersia perrieri
LPERR09G02880
N
0.723
Pavir.Fb01507
Panicum virgatum
Pavir.Fb01507
I
0.722
GRMZM2G050851
Zea mays
GRMZM2G050851
I
0.722
Pavir.J17283
Panicum virgatum
Pavir.J17283
I
0.722
Carubv10020812m.g
Capsella rubella
Carubv10020812m.g
I
0.719
Thhalv10018945m.g
Eutrema salsugineum
Thhalv10018945m.g
I
0.719
Cagra.1013s0062
Capsella grandiflora
Cagra.1013s0062
I
0.719
Solyc01g065980.2
Solanum lycopersicum
Solyc01g065980.2
I
0.716
PGSC0003DMG400016812
Solanum tuberosum
PGSC0003DMG400016812
I
0.716
GLYMA06G44430
Glycine max
GLYMA06G44430
I
0.714
GRMZM2G114820
Zea mays
GRMZM2G114820
I
0.714
Sb04g035160
Sorghum bicolor
Sb04g035160
I
0.713
GRMZM2G018984
Zea mays
GRMZM2G018984
I
0.712
Sb07g022180
Sorghum bicolor
Sb07g022180
I
0.711
GRMZM2G020150
Zea mays
GRMZM2G020150
I
0.709
Pavir.J32835
Panicum virgatum
Pavir.J32835
I
0.709
Pavir.J26885
Panicum virgatum
Pavir.J26885
I
0.709
Pavir.Ib00526
Panicum virgatum
Pavir.Ib00526
I
0.709
Gorai.007G312200
Gossypium raimondii
Gorai.007G312200
I
0.709
Pavir.J34139
Panicum virgatum
Pavir.J34139
I
0.709
GRMZM2G174347
Zea mays
GRMZM2G174347
I
0.707
Solyc07g049490.1
Solanum lycopersicum
Solyc07g049490.1
I
0.707
TRIUR3_20682
Triticum urartu
TRIUR3_20682
I
0.706
Traes_5BL_7F84602F3
Triticum aestivum
Traes_5BL_7F84602F3
I
0.706
MLOC_38561
Hordeum vulgare
MLOC_38561
I
0.706
Traes_5AL_14D9A9844
Triticum aestivum
Traes_5AL_14D9A9844
I
0.706
F775_30714
Aegilops tauschii
F775_30714
I
0.706
Traes_5DL_26F3B188A
Triticum aestivum
Traes_5DL_26F3B188A
I
0.706
GLYMA12G13315
Glycine max
GLYMA12G13315
I
0.706
PGSC0003DMG400000681
Solanum tuberosum
PGSC0003DMG400000681
I
0.706
Bra001640
Brassica rapa
Bra001640
I
0.705
Pavir.Ab00660
Panicum virgatum
Pavir.Ab00660
I
0.705
Bo3g068510
Brassica oleracea
Bo3g068510
I
0.705
GRMZM2G146028
Zea mays
GRMZM2G146028
I
0.705
Pavir.Aa03102
Panicum virgatum
Pavir.Aa03102
I
0.705
Sb04g006080
Sorghum bicolor
Sb04g006080
I
0.705
ONIVA09G04210
Oryza nivara
ONIVA09G04210
I
0.704
GLYMA02G46340
Glycine max
GLYMA02G46340
I
0.704
BGIOSGA038064
Oryza indica
BGIOSGA038064
I
0.704
ORGLA09G0030400
Oryza glaberrima
ORGLA09G0030400
I
0.704
BRADI3G06562
Brachypodium distachyon
BRADI3G06562
I
0.704
GRMZM2G079653
Zea mays
GRMZM2G079653
I
0.704
OMERI02G07840
Oryza meridionalis
OMERI02G07840
I
0.703
OMERI09G03030
Oryza meridionalis
OMERI09G03030
I
0.703
ORUFI02G06880
Oryza rufipogon
ORUFI02G06880
I
0.703
OGLUM02G06860
Oryza glumaepatula
OGLUM02G06860
I
0.703
ORGLA02G0063000
Oryza glaberrima
ORGLA02G0063000
I
0.703
Bostr.26675s0388
Boechera stricta
Bostr.26675s0388
I
0.703
OBART01G06430
Oryza barthii
OBART01G06430
I
0.702
OGLUM09G04690
Oryza glumaepatula
OGLUM09G04690
I
0.702
Thhalv10021393m.g
Eutrema salsugineum
Thhalv10021393m.g
I
0.702
OS09G0287000
Oryza sativa
OS09G0287000
I
0.702
GRMZM2G148333
Zea mays
GRMZM2G148333
I
0.702
ORUFI09G04420
Oryza rufipogon
ORUFI09G04420
I
0.702
OPUNC02G05940
Oryza punctata
OPUNC02G05940
I
0.702
LPERR02G05920
Leersia perrieri
LPERR02G05920
I
0.702
estExt_Genemark1.C_100079
Coccomyxa subellipsoidea C169
estExt_Genemark1.C_100079
I
0.700
OPUNC09G03540
Oryza punctata
OPUNC09G03540
I
0.700
estExt_fgeneshCV_pg.C_120242
Chlorella vulgaris
estExt_fgeneshCV_pg.C_120242
I
0.700
cassava42230.valid.m1
Manihot esculenta
cassava42230.valid.m1
I
0.699
GLYMA14G02360
Glycine max
GLYMA14G02360
I
0.699
cassava42231.valid.m1
Manihot esculenta
cassava42231.valid.m1
I
0.699
cassava34729.m1
Manihot esculenta
cassava34729.m1
I
0.699
Ciclev10025816m.g
Citrus clementina
Ciclev10025816m.g
I
0.699
orange1.1g020391m.g
Citrus sinensis
orange1.1g020391m.g
I
0.699
AMTR_s00040p00180260
Amborella trichopoda
AMTR_s00040p00180260
I
0.698
Cla010886
Citrullus lanatus
Cla010886
I
0.696
mgf005222m
Mimulus guttatus
mgf005222m
I
0.695
Si030514m.g
Setaria italica
Si030514m.g
I
0.694
Gorai.013G169500
Gossypium raimondii
Gorai.013G169500
I
0.693
GSMUA_Achr10G31090_001
Musa acuminata
GSMUA_Achr10G31090_001
I
0.693
SELMODRAFT_17648
Selaginella moellendorffii
SELMODRAFT_17648
I
0.693
SELMODRAFT_129122
Selaginella moellendorffii
SELMODRAFT_129122
I
0.693
Aquca_076_00008
Aquilegia coerulea
Aquca_076_00008
I
0.692
PDK_20s1440861g004
Phoenix dactylifera
PDK_20s1440861g004
I
0.691
ORUFI09G12180
Oryza rufipogon
ORUFI09G12180
I
0.690
BGIOSGA030816
Oryza indica
BGIOSGA030816
I
0.690
Pavir.Bb02257
Panicum virgatum
Pavir.Bb02257
I
0.690
Traes_5BL_FBC7AF288
Triticum aestivum
Traes_5BL_FBC7AF288
I
0.690
OS09G0434500
Oryza sativa
OS09G0434500
I
0.690
Si030088m.g
Setaria italica
Si030088m.g
I
0.690
Sb02g025530
Sorghum bicolor
Sb02g025530
I
0.690
OBART09G11390
Oryza barthii
OBART09G11390
I
0.690
BRADI4G31040
Brachypodium distachyon
BRADI4G31040
I
0.690
Pavir.Fa01730
Panicum virgatum
Pavir.Fa01730
I
0.690
ORGLA09G0085500
Oryza glaberrima
ORGLA09G0085500
I
0.690
OLONG_007389
Oryza longistaminata
OLONG_007389
I
0.690
ONIVA09G11170
Oryza nivara
ONIVA09G11170
I
0.690
OMERI09G08870
Oryza meridionalis
OMERI09G08870
I
0.690
LPERR09G08060
Leersia perrieri
LPERR09G08060
I
0.690
OPUNC09G09870
Oryza punctata
OPUNC09G09870
I
0.690
OGLUM09G11780
Oryza glumaepatula
OGLUM09G11780
I
0.690
OB09G17960
Oryza brachyantha
OB09G17960
I
0.690
Pavir.J01991
Panicum virgatum
Pavir.J01991
I
0.690
Ciclev10023352m.g
Citrus clementina
Ciclev10023352m.g
I
0.689
Pavir.Fb01486
Panicum virgatum
Pavir.Fb01486
I
0.689
orange1.1g043029m.g
Citrus sinensis
orange1.1g043029m.g
I
0.689
OPUNC02G31100
Oryza punctata
OPUNC02G31100
I
0.689
fgenesh2_kg.3__2537__AT3G23220.1
Arabidopsis lyrata
fgenesh2_kg.3__2537__AT3G23220.1
I
0.689
Bra018864
Brassica rapa
Bra018864
I
0.689
Pavir.Fb00952
Panicum virgatum
Pavir.Fb00952
I
0.689
BRADI1G72457
Brachypodium distachyon
BRADI1G72457
I
0.688
mgf009667m
Mimulus guttatus
mgf009667m
I
0.687
mgf010035m
Mimulus guttatus
mgf010035m
I
0.687
Eucgr.K00734
Eucalyptus grandis
Eucgr.K00734
I
0.686
Bo1g123160
Brassica oleracea
Bo1g123160
I
0.685
Traes_6DL_DD82BD107
Triticum aestivum
Traes_6DL_DD82BD107
I
0.685
Traes_6AL_DAA2D7F8A
Triticum aestivum
Traes_6AL_DAA2D7F8A
I
0.685
TRIUR3_08978
Triticum urartu
TRIUR3_08978
I
0.685
Bra021200
Brassica rapa
Bra021200
I
0.685
Bra022176
Brassica rapa
Bra022176
I
0.685
Traes_6BL_6AEADC565
Triticum aestivum
Traes_6BL_6AEADC565
I
0.685
Pavir.Aa00281
Panicum virgatum
Pavir.Aa00281
I
0.685
gene03450-v1.0-hybrid
Fragaria vesca
gene03450-v1.0-hybrid
I
0.685
Si017568m.g
Setaria italica
Si017568m.g
I
0.685
GRMZM2G018398
Zea mays
GRMZM2G018398
I
0.685
GSMUA_Achr2G07300_001
Musa acuminata
GSMUA_Achr2G07300_001
I
0.685
ONIVA06G06990
Oryza nivara
ONIVA06G06990
I
0.685
F775_31907
Aegilops tauschii
F775_31907
I
0.685
Pavir.J04875
Panicum virgatum
Pavir.J04875
I
0.685
OSTLU_9237
Ostreococcus lucimarinus
OSTLU_9237
I
0.684
Pavir.Cb01365
Panicum virgatum
Pavir.Cb01365
I
0.684
Pavir.J21082
Panicum virgatum
Pavir.J21082
I
0.684
fgenesh1_pm.chr_4_#_35
Ostreococcus RCC809
fgenesh1_pm.chr_4_#_35
I
0.684
Sb09g017950
Sorghum bicolor
Sb09g017950
I
0.684
F775_15852
Aegilops tauschii
F775_15852
I
0.684
estExt_fgenesh1_pg.C_Chr_04.00010339
Ostreococcus tauri
estExt_fgenesh1_pg.C_Chr_04.00010339
I
0.684
Si018144m.g
Setaria italica
Si018144m.g
I
0.683
AMTR_s00129p00119770
Amborella trichopoda
AMTR_s00129p00119770
I
0.683
Lus10035076.g
Linum usitatissimum
Lus10035076.g
I
0.682
LPERR04G16740
Leersia perrieri
LPERR04G16740
I
0.682
Bo5g130490
Brassica oleracea
Bo5g130490
I
0.682
cassava4507.m1
Manihot esculenta
cassava4507.m1
I
0.682
Bostr.28625s0277
Boechera stricta
Bostr.28625s0277
I
0.682
Bra027355
Brassica rapa
Bra027355
I
0.682
RAP2-12
Arabidopsis thaliana
AT1G53910
D
0.681
OPUNC04G18300
Oryza punctata
OPUNC04G18300
I
0.681
BGIOSGA014605
Oryza indica
BGIOSGA014605
I
0.681
ONIVA04G18900
Oryza nivara
ONIVA04G18900
I
0.681
Carubv10009538m.g
Capsella rubella
Carubv10009538m.g
I
0.681
ORGLA04G0177100
Oryza glaberrima
ORGLA04G0177100
I
0.681
Thhalv10011606m.g
Eutrema salsugineum
Thhalv10011606m.g
I
0.681
OS04G0546800
Oryza sativa
OS04G0546800
I
0.681
Bostr.7128s0090
Boechera stricta
Bostr.7128s0090
I
0.681
Cagra.0769s0008
Capsella grandiflora
Cagra.0769s0008
I
0.681
ORUFI04G22230
Oryza rufipogon
ORUFI04G22230
I
0.681
OGLUM04G20600
Oryza glumaepatula
OGLUM04G20600
I
0.681
OMERI02G32080
Oryza meridionalis
OMERI02G32080
I
0.681
OMERI04G17100
Oryza meridionalis
OMERI04G17100
I
0.681
RAP2.12
Arabidopsis lyrata
scaffold_105235.1
I
0.681
GSMUA_Achr1G25890_001
Musa acuminata
GSMUA_Achr1G25890_001
I
0.681
RAP2.2
Arabidopsis lyrata
scaffold_301660.1
I
0.680
ERF7
Arabidopsis thaliana
AT3G20310
D
0.680
VIT_15s0021g01610
Vitis vinifera
VIT_15s0021g01610
I
0.680
RAP2-2
Arabidopsis thaliana
AT3G14230
D
0.680
Thhalv10020945m.g
Eutrema salsugineum
Thhalv10020945m.g
I
0.680
Bra021543
Brassica rapa
Bra021543
I
0.680
Cagra.1582s0005
Capsella grandiflora
Cagra.1582s0005
I
0.680
VIT_15s0021g01590
Vitis vinifera
VIT_15s0021g01590
I
0.680
GSMUA_Achr6G10870_001
Musa acuminata
GSMUA_Achr6G10870_001
I
0.680
Carubv10013925m.g
Capsella rubella
Carubv10013925m.g
I
0.680
VIT_15s0021g01600
Vitis vinifera
VIT_15s0021g01600
I
0.680
evm.TU.supercontig_481.1
Carica papaya
evm.TU.supercontig_481.1
I
0.679
Pavir.Ga01099
Panicum virgatum
Pavir.Ga01099
I
0.679
SapurV1A.1700s0030
Salix purpurea
SapurV1A.1700s0030
I
0.679
MDP0000308922
Malus domestica
MDP0000308922
I
0.679
MDP0000403580
Malus domestica
MDP0000403580
I
0.679
Lus10037448.g
Linum usitatissimum
Lus10037448.g
I
0.679
Lus10013186.g
Linum usitatissimum
Lus10013186.g
I
0.679
Pavir.Gb00956
Panicum virgatum
Pavir.Gb00956
I
0.679
Gorai.011G056300
Gossypium raimondii
Gorai.011G056300
I
0.679
gene05448-v1.0-hybrid
Fragaria vesca
gene05448-v1.0-hybrid
I
0.679
POPTR_0001s16400
Populus trichocarpa
POPTR_0001s16400
I
0.679
GLYMA03G42450
Glycine max
GLYMA03G42450
I
0.679
GLYMA19G45200
Glycine max
GLYMA19G45200
I
0.679
Sb06g024355
Sorghum bicolor
Sb06g024355
I
0.679
Sb08g004260
Sorghum bicolor
Sb08g004260
I
0.679
Si030692m.g
Setaria italica
Si030692m.g
I
0.679
Eucgr.I02155
Eucalyptus grandis
Eucgr.I02155
I
0.679
GRMZM2G055180
Zea mays
GRMZM2G055180
I
0.679
GSMUA_Achr9G18090_001
Musa acuminata
GSMUA_Achr9G18090_001
I
0.679
MTR_2g105380
Medicago truncatula
MTR_2g105380
I
0.679
GSMUA_Achr3G10140_001
Musa acuminata
GSMUA_Achr3G10140_001
I
0.679
GRMZM2G080516
Zea mays
GRMZM2G080516
I
0.679
Si033388m.g
Setaria italica
Si033388m.g
I
0.679
Si023329m.g
Setaria italica
Si023329m.g
I
0.679
TCM_029232
Theobroma cacao
TCM_029232
I
0.679
Cla015763
Citrullus lanatus
Cla015763
I
0.679
cassava31609.valid.m1
Manihot esculenta
cassava31609.valid.m1
I
0.679
cassava31610.valid.m1
Manihot esculenta
cassava31610.valid.m1
I
0.679
Cucsa.359880
Cucumis sativus
Cucsa.359880
I
0.679
Ca_16180
Cicer arietinum
Ca_16180
I
0.679
27585.m000144
Ricinus communis
27585.m000144
I
0.679
VIT_09s0002g00470
Vitis vinifera
VIT_09s0002g00470
I
0.679
Traes_2AL_158F8EE88
Triticum aestivum
Traes_2AL_158F8EE88
I
0.678
MLOC_10878
Hordeum vulgare
MLOC_10878
I
0.678
GRMZM2G173771
Zea mays
GRMZM2G173771
I
0.678
Traes_2BL_CF47A74CC
Triticum aestivum
Traes_2BL_CF47A74CC
I
0.678
Sb07g025843
Sorghum bicolor
Sb07g025843
I
0.678
BGIOSGA030065
Oryza indica
BGIOSGA030065
I
0.677
GSMUA_Achr11G15810_001
Musa acuminata
GSMUA_Achr11G15810_001
I
0.677
GSMUA_Achr3G13010_001
Musa acuminata
GSMUA_Achr3G13010_001
I
0.677
GRMZM2G103085
Zea mays
GRMZM2G103085
I
0.677
ORUFI09G04400
Oryza rufipogon
ORUFI09G04400
I
0.677
ORGLA09G0030300
Oryza glaberrima
ORGLA09G0030300
I
0.677
OS09G0286600
Oryza sativa
OS09G0286600
I
0.677
PGSC0003DMG400014594
Solanum tuberosum
PGSC0003DMG400014594
I
0.677
Aquca_020_00575
Aquilegia coerulea
Aquca_020_00575
I
0.677
OPUNC09G03530
Oryza punctata
OPUNC09G03530
I
0.677
ONIVA09G04180
Oryza nivara
ONIVA09G04180
I
0.677
MTR_8g022820
Medicago truncatula
MTR_8g022820
I
0.677
OGLUM09G04680
Oryza glumaepatula
OGLUM09G04680
I
0.677
OMERI09G03020
Oryza meridionalis
OMERI09G03020
I
0.677
Pavir.J28880
Panicum virgatum
Pavir.J28880
I
0.677