CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_77669
(
Hordeum vulgare
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
MLOC_77669
T002751_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
EREBP1
M09708_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$EREBP1_01
0.781
0.837
Q7Y1W2_TOBAC
M09735_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CEF1_01
0.773
0.837
Q2TN80_WHEAT
M09715_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_02
0.759
0.816
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.757
0.796
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.757
0.796
HRE1
M06595_2.00
Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHKVNDN
Dap-seq
OMalley et al.(2016)
ERF73_col_a
0.740
0.776
HRE1
M06596_2.00
Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY
RYGGCGGCGGHGRNDKHDRND
Dap-seq
OMalley et al.(2016)
ERF73_colamp_a
0.740
0.776
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN
NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.735
0.776
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.726
0.714
0100010458
M01644_2.00
Ostreococcus tauri
MGCCGSCR
YGSCGGCK
PBM
Weirauch et al.(2014)
pTH9447
0.726
0.735
RAP2-3
M01050_2.00
Arabidopsis thaliana
CGCCGCCR
YGGCGGCG
PBM
Sullivan et al.(2014)
pTH8811
0.707
0.776
RAP2-3
M00847_2.00
Arabidopsis thaliana
NMGCCGCCDN
NHGGCGGCKN
PBM
Franco-Zorrilla et al.(2014)
RAP2.3
0.707
0.776
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.704
0.673
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.704
0.673
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.702
0.714
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.702
0.714
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.702
0.714
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.700
0.714
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.700
0.714
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.700
0.714
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.696
0.714
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.696
0.673
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.695
0.673
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.694
0.653
O65242_TOBAC
M09730_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.692
0.612
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.690
0.673
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD
HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.690
0.673
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.689
0.714
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.689
0.714
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.688
0.673
ERF091
M06638_2.00
Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN
Dap-seq
OMalley et al.(2016)
AT4G18450_col_a
0.686
0.735
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.685
0.694
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.685
0.694
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN
NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.681
0.714
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_77669.1
AP2
20
71
THYRGIRQRPWGKWAAEIRDPIKGVRVWLGTFNSAEEAARAYDVAARRIRSK
MLOC_77669.2
AP2
20
71
THYRGIRQRPWGKWAAEIRDPIKGVRVWLGTFNSAEEAARAYDVAARRIRSK
MLOC_77669.3
AP2
73
124
THYRGIRQRPWGKWAAEIRDPIKGVRVWLGTFNSAEEAARAYDVAARRIRSK
Links
Other
AP2
family TFs
Other
Hordeum vulgare
TFs
1008 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy