CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_1g097190
(
Medicago truncatula
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
MTR_1g097190
T002800_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF11
M01606_2.00
Arabidopsis thaliana
NHGCCGNHNN
NNDNCGGCDN
PBM
Weirauch et al.(2014)
pTH8117
0.689
0.700
ERF11
M06575_2.00
Arabidopsis thaliana
NHNNHDSCGCCGYCRHHNNN
NNNDDYGRCGGCGSHDNNDN
Dap-seq
OMalley et al.(2016)
ERF11_colamp_a
0.689
0.700
ERF11
M06576_2.00
Arabidopsis thaliana
NHNYCKCCGCCGYHD
HDRCGGCGGMGRNDN
Dap-seq
OMalley et al.(2016)
ERF11_col_b
0.689
0.700
Q84J59_MAIZE
M09717_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.687
0.640
ERF086
M06663_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYHD
HDRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
PUCHI_col_a
0.683
0.640
ERF086
M06664_2.00
Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN
NNNDHDDHDRCGGCGGMGDHDNNNN
Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a
0.683
0.640
LEP
M06661_2.00
Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN
Dap-seq
OMalley et al.(2016)
LEP_col_a
0.678
0.680
ERF087
M06573_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYYD
HRRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
AT1G28160_col_a
0.678
0.660
ERF087
M06574_2.00
Arabidopsis thaliana
HDYCKCCGCCGYCR
YGRCGGCGGMGRHD
Dap-seq
OMalley et al.(2016)
AT1G28160_colamp_a
0.678
0.660
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH43599
AP2
21
71
TMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAVAYDISSIKICG
Links
Other
AP2
family TFs
Other
Medicago truncatula
TFs
191 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA10G36300
Glycine max
GLYMA10G36300
I
0.812
GLYMA20G31293
Glycine max
GLYMA20G31293
I
0.812
OGLUM08G04690
Oryza glumaepatula
OGLUM08G04690
I
0.753
LPERR08G04370
Leersia perrieri
LPERR08G04370
I
0.753
ONIVA08G04340
Oryza nivara
ONIVA08G04340
I
0.753
OPUNC08G04370
Oryza punctata
OPUNC08G04370
I
0.753
OS08G0173700
Oryza sativa
OS08G0173700
I
0.753
BGIOSGA027571
Oryza indica
BGIOSGA027571
I
0.753
ORUFI08G04980
Oryza rufipogon
ORUFI08G04980
I
0.753
ORGLA08G0039300
Oryza glaberrima
ORGLA08G0039300
I
0.753
SapurV1A.1095s0050
Salix purpurea
SapurV1A.1095s0050
I
0.746
POPTR_0019s11780
Populus trichocarpa
POPTR_0019s11780
I
0.746
TCM_036616
Theobroma cacao
TCM_036616
I
0.745
cassava21477.m1
Manihot esculenta
cassava21477.m1
I
0.745
GSMUA_Achr7G17910_001
Musa acuminata
GSMUA_Achr7G17910_001
I
0.743
GSMUA_Achr6G35320_001
Musa acuminata
GSMUA_Achr6G35320_001
I
0.739
mgf025433m
Mimulus guttatus
mgf025433m
I
0.734
Bostr.13671s0161
Boechera stricta
Bostr.13671s0161
I
0.733
Bo8g107890
Brassica oleracea
Bo8g107890
I
0.731
Bra026949
Brassica rapa
Bra026949
I
0.731
Cagra.0568s0211
Capsella grandiflora
Cagra.0568s0211
I
0.730
Carubv10012659m.g
Capsella rubella
Carubv10012659m.g
I
0.730
ERF088
Arabidopsis thaliana
AT1G12890
I
0.728
Thhalv10008615m.g
Eutrema salsugineum
Thhalv10008615m.g
I
0.728
fgenesh2_kg.1__1396__AT1G12890.1
Arabidopsis lyrata
fgenesh2_kg.1__1396__AT1G12890.1
I
0.728
AMTR_s00057p00191330
Amborella trichopoda
AMTR_s00057p00191330
I
0.703
AMTR_s00010p00240320
Amborella trichopoda
AMTR_s00010p00240320
I
0.703
Gorai.005G058700
Gossypium raimondii
Gorai.005G058700
I
0.703
TCM_017382
Theobroma cacao
TCM_017382
I
0.698
Si015237m.g
Setaria italica
Si015237m.g
I
0.696
MTR_4g119270
Medicago truncatula
MTR_4g119270
I
0.694
Ca_06835
Cicer arietinum
Ca_06835
I
0.694
Pm013049
Prunus mume
Pm013049
I
0.694
Ca_00514
Cicer arietinum
Ca_00514
I
0.693
MDP0000778140
Malus domestica
MDP0000778140
I
0.693
Sb07g004655
Sorghum bicolor
Sb07g004655
I
0.692
Solyc04g072300.1
Solanum lycopersicum
Solyc04g072300.1
I
0.692
GRMZM2G047999
Zea mays
GRMZM2G047999
I
0.691
Gorai.011G188200
Gossypium raimondii
Gorai.011G188200
I
0.690
ERF11
Arabidopsis thaliana
AT1G28370
D
0.689
LPERR02G14670
Leersia perrieri
LPERR02G14670
I
0.688
BGIOSGA006366
Oryza indica
BGIOSGA006366
I
0.688
ORGLA02G0159100
Oryza glaberrima
ORGLA02G0159100
I
0.688
OS02G0520000
Oryza sativa
OS02G0520000
I
0.688
OMERI04G06880
Oryza meridionalis
OMERI04G06880
I
0.688
OGLUM02G18720
Oryza glumaepatula
OGLUM02G18720
I
0.688
OB02G26200
Oryza brachyantha
OB02G26200
I
0.688
ORUFI02G19410
Oryza rufipogon
ORUFI02G19410
I
0.688
OS07G0669500
Oryza sativa
OS07G0669500
I
0.687
BRADI1G18580
Brachypodium distachyon
BRADI1G18580
I
0.687
GSMUA_Achr3G23710_001
Musa acuminata
GSMUA_Achr3G23710_001
I
0.687
PRUPE_ppa023203mg
Prunus persica
PRUPE_ppa023203mg
I
0.687
ORUFI07G26720
Oryza rufipogon
ORUFI07G26720
I
0.687
GLYMA07G37990
Glycine max
GLYMA07G37990
I
0.687
OPUNC07G24180
Oryza punctata
OPUNC07G24180
I
0.687
GLYMA17G02711
Glycine max
GLYMA17G02711
I
0.687
BGIOSGA023741
Oryza indica
BGIOSGA023741
I
0.687
ORGLA07G0201100
Oryza glaberrima
ORGLA07G0201100
I
0.687
Q84J59_MAIZE
Zea mays
Q84J59_MAIZE
D
0.687
Si032771m.g
Setaria italica
Si032771m.g
I
0.687
Eucgr.H03870
Eucalyptus grandis
Eucgr.H03870
I
0.687
LjT18C07.30.nc
Lotus japonicus
LjT18C07.30.nc
I
0.687
cassava21600.m1
Manihot esculenta
cassava21600.m1
I
0.687
cassava46974.m1
Manihot esculenta
cassava46974.m1
I
0.687
29726.m004013
Ricinus communis
29726.m004013
I
0.687
Pm008145
Prunus mume
Pm008145
I
0.687
Gorai.006G264300
Gossypium raimondii
Gorai.006G264300
I
0.687
TCM_021164
Theobroma cacao
TCM_021164
I
0.687
gene06790-v1.0-hybrid
Fragaria vesca
gene06790-v1.0-hybrid
I
0.687
evm.TU.supercontig_16.148
Carica papaya
evm.TU.supercontig_16.148
I
0.687
Pavir.Ba00192
Panicum virgatum
Pavir.Ba00192
I
0.687
Lus10033963.g
Linum usitatissimum
Lus10033963.g
I
0.687
GRMZM2G458437
Zea mays
GRMZM2G458437
I
0.687
OBART07G25780
Oryza barthii
OBART07G25780
I
0.687
GRMZM2G307119
Zea mays
GRMZM2G307119
I
0.687
LPERR07G22580
Leersia perrieri
LPERR07G22580
I
0.687
OGLUM07G25800
Oryza glumaepatula
OGLUM07G25800
I
0.687
GSMUA_Achr8G06870_001
Musa acuminata
GSMUA_Achr8G06870_001
I
0.687
ONIVA07G25390
Oryza nivara
ONIVA07G25390
I
0.687
OMERI07G22420
Oryza meridionalis
OMERI07G22420
I
0.687
OB04G18290
Oryza brachyantha
OB04G18290
I
0.686
Sb06g014800
Sorghum bicolor
Sb06g014800
I
0.686
BGIOSGA016321
Oryza indica
BGIOSGA016321
I
0.686
Pavir.J16868
Panicum virgatum
Pavir.J16868
I
0.686
Si012587m.g
Setaria italica
Si012587m.g
I
0.686
Solyc01g067540.1
Solanum lycopersicum
Solyc01g067540.1
I
0.686
LPERR04G07940
Leersia perrieri
LPERR04G07940
I
0.686
Thhalv10009328m.g
Eutrema salsugineum
Thhalv10009328m.g
I
0.686
OPUNC04G09190
Oryza punctata
OPUNC04G09190
I
0.686
ONIVA04G09120
Oryza nivara
ONIVA04G09120
I
0.686
OMERI04G09670
Oryza meridionalis
OMERI04G09670
I
0.686
GRMZM2G079825
Zea mays
GRMZM2G079825
I
0.686
GRMZM2G023708
Zea mays
GRMZM2G023708
I
0.686
BRADI3G44470
Brachypodium distachyon
BRADI3G44470
I
0.686
OS04G0399800
Oryza sativa
OS04G0399800
I
0.686
OGLUM04G10880
Oryza glumaepatula
OGLUM04G10880
I
0.686
PGSC0003DMG400022667
Solanum tuberosum
PGSC0003DMG400022667
I
0.686
ORUFI04G12370
Oryza rufipogon
ORUFI04G12370
I
0.686
Pavir.Gb01913
Panicum virgatum
Pavir.Gb01913
I
0.686
Pavir.Ab01422
Panicum virgatum
Pavir.Ab01422
I
0.684
Si019641m.g
Setaria italica
Si019641m.g
I
0.684
Pavir.Aa01903
Panicum virgatum
Pavir.Aa01903
I
0.684
GSMUA_AchrUn_randomG16100_001
Musa acuminata
GSMUA_AchrUn_randomG16100_001
I
0.684
MDP0000467753
Malus domestica
MDP0000467753
I
0.684
GSMUA_Achr8G30180_001
Musa acuminata
GSMUA_Achr8G30180_001
I
0.684
Cagra.0712s0022
Capsella grandiflora
Cagra.0712s0022
I
0.683
Bo9g154770
Brassica oleracea
Bo9g154770
I
0.683
Thhalv10014022m.g
Eutrema salsugineum
Thhalv10014022m.g
I
0.683
Bostr.26527s0355
Boechera stricta
Bostr.26527s0355
I
0.683
Ciclev10006861m.g
Citrus clementina
Ciclev10006861m.g
I
0.683
Carubv10002663m.g
Capsella rubella
Carubv10002663m.g
I
0.683
Aquca_017_00248
Aquilegia coerulea
Aquca_017_00248
I
0.683
Bo2g016580
Brassica oleracea
Bo2g016580
I
0.683
Bo3g013220
Brassica oleracea
Bo3g013220
I
0.683
Cucsa.253400
Cucumis sativus
Cucsa.253400
I
0.683
Bra006466
Brassica rapa
Bra006466
I
0.683
Bra002168
Brassica rapa
Bra002168
I
0.683
ERF086
Arabidopsis thaliana
AT5G18560
D
0.683
PUCHI
Arabidopsis lyrata
fgenesh2_kg.6__1873__AT5G18560.1
I
0.683
SapurV1A.0022s0550
Salix purpurea
SapurV1A.0022s0550
I
0.683
Bra023684
Brassica rapa
Bra023684
I
0.683
PUCHI
Populus trichocarpa
POPTR_0008s22750
I
0.683
orange1.1g044016m.g
Citrus sinensis
orange1.1g044016m.g
I
0.683
Bra006222
Brassica rapa
Bra006222
I
0.682
Cla009214
Citrullus lanatus
Cla009214
I
0.682
Bo3g009410
Brassica oleracea
Bo3g009410
I
0.682
GSMUA_Achr3G02360_001
Musa acuminata
GSMUA_Achr3G02360_001
I
0.681
Aquca_013_00162
Aquilegia coerulea
Aquca_013_00162
I
0.681
GSMUA_Achr10G17370_001
Musa acuminata
GSMUA_Achr10G17370_001
I
0.681
POPTR_0008s19030
Populus trichocarpa
POPTR_0008s19030
I
0.679
TRIUR3_35273
Triticum urartu
TRIUR3_35273
I
0.679
Traes_2BL_E7871AFBA
Triticum aestivum
Traes_2BL_E7871AFBA
I
0.679
SapurV1A.0069s0280
Salix purpurea
SapurV1A.0069s0280
I
0.679
Traes_2BL_5DC21F3CD
Triticum aestivum
Traes_2BL_5DC21F3CD
I
0.679
Traes_2BL_970693C1F
Triticum aestivum
Traes_2BL_970693C1F
I
0.679
MLOC_73522
Hordeum vulgare
MLOC_73522
I
0.679
Traes_2AL_F24D031AA
Triticum aestivum
Traes_2AL_F24D031AA
I
0.679
MDP0000264124
Malus domestica
MDP0000264124
I
0.678
Carubv10012143m.g
Capsella rubella
Carubv10012143m.g
I
0.678
Thhalv10015796m.g
Eutrema salsugineum
Thhalv10015796m.g
I
0.678
gene22872-v1.0-hybrid
Fragaria vesca
gene22872-v1.0-hybrid
I
0.678
Carubv10002480m.g
Capsella rubella
Carubv10002480m.g
I
0.678
Cagra.5588s0020
Capsella grandiflora
Cagra.5588s0020
I
0.678
MDP0000263008
Malus domestica
MDP0000263008
I
0.678
Cagra.1822s0047
Capsella grandiflora
Cagra.1822s0047
I
0.678
LEP
Arabidopsis lyrata
scaffold_601402.1
I
0.678
fgenesh2_kg.1__2978__AT1G28160.1
Arabidopsis lyrata
fgenesh2_kg.1__2978__AT1G28160.1
I
0.678
Bra030076
Brassica rapa
Bra030076
I
0.678
TCM_008270
Theobroma cacao
TCM_008270
I
0.678
Bra023440
Brassica rapa
Bra023440
I
0.678
LEP
Arabidopsis thaliana
AT5G13910
D
0.678
Solyc03g006320.1
Solanum lycopersicum
Solyc03g006320.1
I
0.678
ERF087
Arabidopsis thaliana
AT1G28160
D
0.678
Bostr.2902s0126
Boechera stricta
Bostr.2902s0126
I
0.678
PRUPE_ppa018569mg
Prunus persica
PRUPE_ppa018569mg
I
0.678
Bo2g011600
Brassica oleracea
Bo2g011600
I
0.678
Bra010901
Brassica rapa
Bra010901
I
0.678
Pm007113
Prunus mume
Pm007113
I
0.678
Bo7g048420
Brassica oleracea
Bo7g048420
I
0.678
Cucsa.126880
Cucumis sativus
Cucsa.126880
I
0.678
Bo3g143080
Brassica oleracea
Bo3g143080
I
0.678
PGSC0003DMG400002191
Solanum tuberosum
PGSC0003DMG400002191
I
0.677
Bo5g054550
Brassica oleracea
Bo5g054550
I
0.677
PGSC0003DMG400002185
Solanum tuberosum
PGSC0003DMG400002185
I
0.677
Bo9g166320
Brassica oleracea
Bo9g166320
I
0.677
Bra008793
Brassica rapa
Bra008793
I
0.677
SapurV1A.0210s0020
Salix purpurea
SapurV1A.0210s0020
I
0.677
SapurV1A.0122s0040
Salix purpurea
SapurV1A.0122s0040
I
0.677
SapurV1A.0444s0130
Salix purpurea
SapurV1A.0444s0130
I
0.677
SapurV1A.0444s0140
Salix purpurea
SapurV1A.0444s0140
I
0.677
AMTR_s00016p00238800
Amborella trichopoda
AMTR_s00016p00238800
I
0.677
orange1.1g037093m.g
Citrus sinensis
orange1.1g037093m.g
I
0.677
POPTR_0003s15940
Populus trichocarpa
POPTR_0003s15940
I
0.677
30131.m006951
Ricinus communis
30131.m006951
I
0.677
Ciclev10017494m.g
Citrus clementina
Ciclev10017494m.g
I
0.677
Eucgr.B03565
Eucalyptus grandis
Eucgr.B03565
I
0.677
cassava11359.m1
Manihot esculenta
cassava11359.m1
I
0.677
cassava11599.m1
Manihot esculenta
cassava11599.m1
I
0.677
mgf019421m
Mimulus guttatus
mgf019421m
I
0.677
cassava21525.m1
Manihot esculenta
cassava21525.m1
I
0.677
cassava21524.m1
Manihot esculenta
cassava21524.m1
I
0.677
30128.m008571
Ricinus communis
30128.m008571
I
0.677
Eucgr.I01576
Eucalyptus grandis
Eucgr.I01576
I
0.677
Gorai.005G197800
Gossypium raimondii
Gorai.005G197800
I
0.677
POPTR_0003s07540
Populus trichocarpa
POPTR_0003s07540
I
0.677
POPTR_0001s15710
Populus trichocarpa
POPTR_0001s15710
I
0.677
Solyc11g045680.1
Solanum lycopersicum
Solyc11g045680.1
I
0.677
Gorai.004G032500
Gossypium raimondii
Gorai.004G032500
I
0.677
evm.TU.supercontig_70.47
Carica papaya
evm.TU.supercontig_70.47
I
0.677
LEP
Vitis vinifera
VIT_14s0068g00860
I
0.677
POPTR_0001s12820
Populus trichocarpa
POPTR_0001s12820
I
0.677