MTR_1g101600 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_1g101600 T002803_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.735 0.900
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.735 0.900
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.724 0.900
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.724 0.900
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.724 0.900
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.724 0.900
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.723 0.900
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.723 0.900
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.723 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES62573 AP2 39 90

Links

Other AP2 family TFs
Other Medicago truncatula TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30147.m014313 Ricinus communis 30147.m014313 I 0.719
30190.m011120 Ricinus communis 30190.m011120 I 0.692
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.677
DREB1C Arabidopsis thaliana AT4G25470 D 0.723
DREB1A Arabidopsis thaliana AT4G25480 D 0.724
DREB1D Arabidopsis thaliana AT5G51990 D 0.735
Bo9g104770 Brassica oleracea Bo9g104770 I 0.735
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.735
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.723
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.749
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.723
Bra028290 Brassica rapa Bra028290 I 0.735
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.735
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.752
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.723
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.723
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.693
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.735
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.738
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.745
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.702
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.703
Ca_02407 Cicer arietinum Ca_02407 N 0.681
Ca_03665 Cicer arietinum Ca_03665 N 0.679
Ca_04504 Cicer arietinum Ca_04504 I 0.820
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.811
Cla002362 Citrullus lanatus Cla002362 I 0.750
Cla006315 Citrullus lanatus Cla006315 I 0.744
Cla011674 Citrullus lanatus Cla011674 I 0.709
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.728
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.747
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.705
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.733
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.776
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.765
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.772
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.776
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.742
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.776
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.766
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.735
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.770
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.776
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.766
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.731
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.718
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.707
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.731
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.760
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.717
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.736
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.805
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.687
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.811
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.706
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.745
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.702
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.693
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.685
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.696
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.696
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.696
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.696
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.696
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.696
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.699
MDP0000154764 Malus domestica MDP0000154764 I 0.697
MDP0000198054 Malus domestica MDP0000198054 I 0.695
mgf016974m Mimulus guttatus mgf016974m I 0.784
mgf017136m Mimulus guttatus mgf017136m I 0.700
mgf017477m Mimulus guttatus mgf017477m N 0.719
mgf018631m Mimulus guttatus mgf018631m I 0.784
mgf018934m Mimulus guttatus mgf018934m I 0.784
mgf019061m Mimulus guttatus mgf019061m I 0.684
mgf022408m Mimulus guttatus mgf022408m I 0.784
mgf026339m Mimulus guttatus mgf026339m I 0.698
mgf026642m Mimulus guttatus mgf026642m I 0.753
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.694
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.704
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.693
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.702
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.717
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.701
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.713
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.713
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.695
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.691
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.811
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.684
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.693
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.719
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.718
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.715
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.738
PK23332.1 Cannabis sativa PK23332.1 I 0.760
Pm023769 Prunus mume Pm023769 I 0.679
Pm023775 Prunus mume Pm023775 I 0.694
Pm023777 Prunus mume Pm023777 N 0.713
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.723
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.705
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.682
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.745
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.739
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.694
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.683
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.747
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.728
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.679
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.702
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.724
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.705
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.702
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.723
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.735
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.781
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.766
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.776
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.728
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.725
TCM_016175 Theobroma cacao TCM_016175 I 0.692
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.735
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.749
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.692
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.710