MTR_2g085015 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_2g085015 T002816_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.754 0.769
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.754 0.769
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.715 0.712
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.715 0.712
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.715 0.712
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.711 0.673
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.711 0.673
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.711 0.673
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.711 0.673
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.711 0.673
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.711 0.673
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.702 0.692
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.693 0.712
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.693 0.712
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.693 0.712
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.693 0.712
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH38960 AP2 45 98

Links

Other AP2 family TFs
Other Medicago truncatula TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.816
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.801
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.797
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.777
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.777
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.766
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.764
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.757
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.757
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.755
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.755
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.754
DREB1D Arabidopsis thaliana AT5G51990 D 0.754
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.754
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.754
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.754
Bo9g104770 Brassica oleracea Bo9g104770 I 0.754
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.754
Bra028290 Brassica rapa Bra028290 I 0.754
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.751
60638.m00016 Ricinus communis 60638.m00016 I 0.749
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.747
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.743
Cla002362 Citrullus lanatus Cla002362 I 0.741
MDP0000198054 Malus domestica MDP0000198054 I 0.740
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.737
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.734
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.734
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.734
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.734
30190.m011119 Ricinus communis 30190.m011119 I 0.734
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.733
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.732
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.732
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.732
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.730
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.730
Pm023775 Prunus mume Pm023775 I 0.730
MDP0000154764 Malus domestica MDP0000154764 I 0.730
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.728
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.728
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.728
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.728
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.728
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.727
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.722
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.722
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.722
30190.m011120 Ricinus communis 30190.m011120 I 0.719
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.719
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.719
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.719
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.718
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.717
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.716
mgf026642m Mimulus guttatus mgf026642m I 0.716
Cla006315 Citrullus lanatus Cla006315 I 0.715
Pm023772 Prunus mume Pm023772 I 0.715
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.715
DREB1C Arabidopsis thaliana AT4G25470 D 0.715
Cla011674 Citrullus lanatus Cla011674 I 0.714
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.714
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.713
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.711
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.711
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.711
DREB1F Arabidopsis thaliana AT1G12610 D 0.711
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.711
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.710
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.709
PK23332.1 Cannabis sativa PK23332.1 I 0.709
Bo01335s010 Brassica oleracea Bo01335s010 I 0.709
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.709
Bra016763 Brassica rapa Bra016763 I 0.709
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.707
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.707
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.705
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.705
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.704
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.704
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.704
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.702
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.702
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.702
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.702
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.702
Bo8g108050 Brassica oleracea Bo8g108050 I 0.700
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.700
Bra026963 Brassica rapa Bra026963 I 0.700
mgf026339m Mimulus guttatus mgf026339m I 0.698
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.697
TCM_016175 Theobroma cacao TCM_016175 I 0.697
30147.m014313 Ricinus communis 30147.m014313 I 0.696
mgf017136m Mimulus guttatus mgf017136m I 0.696
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.696
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.695
Pm023769 Prunus mume Pm023769 I 0.695
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.695
Bra027612 Brassica rapa Bra027612 I 0.695
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.695
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.693
DREB1A Arabidopsis thaliana AT4G25480 D 0.693
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.692
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.692
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.692
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.692
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.692
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.692
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.691
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.689
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.689
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.687
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.687
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.687
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.686
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.686
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.686
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.685
Ca_18948 Cicer arietinum Ca_18948 I 0.685
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.685
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.684
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.683
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.683
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.683
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.683
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.682
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.681
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.680
mgf019061m Mimulus guttatus mgf019061m I 0.680
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.680
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.679
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.679
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.678