MTR_3g095190 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_3g095190 T002834_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-6
M00717_2.00
Arabidopsis thaliana
NBGCYGNH

DNCRGCVN
PBM
Chang et al.(2013)
pTH7225
0.754 0.824
RAP2-6
M00841_2.00
Arabidopsis thaliana
NGCCGHHNNN

NNNDDCGGCN
PBM
Franco-Zorrilla et al.(2014)
RAP2.6
0.754 0.824
RAP2-6
M06579_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYMD

HKRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
RAP26_col_a
0.754 0.824
RAP2-6
M06580_2.00
Arabidopsis thaliana
CGCCGY

RCGGCG
Dap-seq
OMalley et al.(2016)
RAP26_colamp_a
0.754 0.824
ABR1
M01051_2.00
Arabidopsis thaliana
NYGSCGSCVNN

NNBGSCGSCRN
PBM
Sullivan et al.(2014)
pTH7383
0.744 0.922
ABR1
M06684_2.00
Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH

DDNDRNDDHKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ABR1_col_a
0.744 0.922
ABR1
M06685_2.00
Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN

NNNNNDWTKGCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ABR1_colamp_a
0.744 0.922
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR

YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.730 0.784
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY

RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.730 0.784
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES72765 AP2 168 219

Links

Other AP2 family TFs
Other Medicago truncatula TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ca_04147 Cicer arietinum Ca_04147 I 0.815
GLYMA04G39510 Glycine max GLYMA04G39510 I 0.810
chr1.CM0032.40.nd Lotus japonicus chr1.CM0032.40.nd I 0.807
SapurV1A.0787s0040 Salix purpurea SapurV1A.0787s0040 I 0.805
PRUPE_ppa006595mg Prunus persica PRUPE_ppa006595mg I 0.801
Pm028829 Prunus mume Pm028829 I 0.801
cassava14079.valid.m1 Manihot esculenta cassava14079.valid.m1 I 0.800
27965.m000108 Ricinus communis 27965.m000108 I 0.800
POPTR_0005s08940 Populus trichocarpa POPTR_0005s08940 I 0.797
Gorai.008G100500 Gossypium raimondii Gorai.008G100500 I 0.796
cassava21882.m1 Manihot esculenta cassava21882.m1 I 0.794
MDP0000226099 Malus domestica MDP0000226099 I 0.794
MDP0000186131 Malus domestica MDP0000186131 I 0.794
MDP0000229036 Malus domestica MDP0000229036 I 0.792
gene21091-v1.0-hybrid Fragaria vesca gene21091-v1.0-hybrid I 0.787
gene27604-v1.0-hybrid Fragaria vesca gene27604-v1.0-hybrid I 0.772
cassava19042.valid.m1 Manihot esculenta cassava19042.valid.m1 I 0.772
MTR_1g098460 Medicago truncatula MTR_1g098460 I 0.772
cassava19043.valid.m1 Manihot esculenta cassava19043.valid.m1 I 0.772
GLYMA16G27950 Glycine max GLYMA16G27950 I 0.771
Eucgr.F02691 Eucalyptus grandis Eucgr.F02691 I 0.771
PGSC0003DMG400018803 Solanum tuberosum PGSC0003DMG400018803 I 0.771
Solyc12g056590.1 Solanum lycopersicum Solyc12g056590.1 I 0.771
GLYMA02G08835 Glycine max GLYMA02G08835 I 0.771
chr2.LjT11L13.40.nc Lotus japonicus chr2.LjT11L13.40.nc I 0.771
evm.TU.supercontig_72.47 Carica papaya evm.TU.supercontig_72.47 I 0.770
BGIOSGA000428 Oryza indica BGIOSGA000428 I 0.766
Pavir.Ea03713 Panicum virgatum Pavir.Ea03713 I 0.766
POPTR_0005s21690 Populus trichocarpa POPTR_0005s21690 I 0.766
OS05G0437100 Oryza sativa OS05G0437100 I 0.766
Si002010m.g Setaria italica Si002010m.g I 0.766
GRMZM2G149756 Zea mays GRMZM2G149756 I 0.766
GRMZM2G100727 Zea mays GRMZM2G100727 I 0.766
BGIOSGA019928 Oryza indica BGIOSGA019928 I 0.766
OS01G0868000 Oryza sativa OS01G0868000 I 0.766
ONIVA01G43260 Oryza nivara ONIVA01G43260 I 0.766
LPERR01G33110 Leersia perrieri LPERR01G33110 I 0.766
ONIVA05G18720 Oryza nivara ONIVA05G18720 I 0.766
ORGLA01G0324200 Oryza glaberrima ORGLA01G0324200 I 0.766
OMERI01G35460 Oryza meridionalis OMERI01G35460 I 0.766
MLOC_7891 Hordeum vulgare MLOC_7891 I 0.766
BRADI2G24170 Brachypodium distachyon BRADI2G24170 I 0.766
ORGLA05G0154400 Oryza glaberrima ORGLA05G0154400 I 0.766
OGLUM01G42800 Oryza glumaepatula OGLUM01G42800 I 0.766
Pavir.J03755 Panicum virgatum Pavir.J03755 I 0.766
ORUFI01G41960 Oryza rufipogon ORUFI01G41960 I 0.766
ORUFI05G19030 Oryza rufipogon ORUFI05G19030 I 0.766
SapurV1A.0134s0150 Salix purpurea SapurV1A.0134s0150 I 0.762
SapurV1A.0327s0220 Salix purpurea SapurV1A.0327s0220 I 0.762
GLYMA20G30835 Glycine max GLYMA20G30835 I 0.762
Gorai.005G078100 Gossypium raimondii Gorai.005G078100 I 0.762
Gorai.010G131500 Gossypium raimondii Gorai.010G131500 I 0.762
MDP0000235028 Malus domestica MDP0000235028 I 0.762
evm.TU.supercontig_49.94 Carica papaya evm.TU.supercontig_49.94 I 0.762
Cucsa.363830 Cucumis sativus Cucsa.363830 I 0.762
Ciclev10001138m.g Citrus clementina Ciclev10001138m.g I 0.762
Carubv10028647m.g Capsella rubella Carubv10028647m.g I 0.762
cassava12737.valid.m1 Manihot esculenta cassava12737.valid.m1 I 0.762
29863.m001066 Ricinus communis 29863.m001066 I 0.762
Cla014021 Citrullus lanatus Cla014021 I 0.762
Eucgr.F04203 Eucalyptus grandis Eucgr.F04203 I 0.762
Pm022509 Prunus mume Pm022509 I 0.762
orange1.1g013225m.g Citrus sinensis orange1.1g013225m.g I 0.762
MDP0000242979 Malus domestica MDP0000242979 I 0.762
GLYMA10G36760 Glycine max GLYMA10G36760 I 0.762
ERF110 Vitis vinifera VIT_18s0072g00260 I 0.762
Ca_18387 Cicer arietinum Ca_18387 I 0.759
mgf019280m Mimulus guttatus mgf019280m I 0.759
Ca_04370 Cicer arietinum Ca_04370 I 0.759
Cagra.14503s0008 Capsella grandiflora Cagra.14503s0008 I 0.757
LPERR05G14130 Leersia perrieri LPERR05G14130 I 0.757
GRMZM2G457562 Zea mays GRMZM2G457562 I 0.757
OPUNC05G15760 Oryza punctata OPUNC05G15760 I 0.757
Lus10028679.g Linum usitatissimum Lus10028679.g I 0.757
GSMUA_Achr6G25680_001 Musa acuminata GSMUA_Achr6G25680_001 I 0.756
chr5.CM0052.240.nd Lotus japonicus chr5.CM0052.240.nd I 0.755
TCM_035671 Theobroma cacao TCM_035671 I 0.755
POPTR_0002s06620 Populus trichocarpa POPTR_0002s06620 I 0.755
Thhalv10014579m.g Eutrema salsugineum Thhalv10014579m.g I 0.754
mgf000075m Mimulus guttatus mgf000075m I 0.754
RAP2-6 Arabidopsis thaliana AT1G43160 D 0.754
Solyc04g071770.2 Solanum lycopersicum Solyc04g071770.2 I 0.752
PGSC0003DMG400006369 Solanum tuberosum PGSC0003DMG400006369 I 0.752
OPUNC11G03940 Oryza punctata OPUNC11G03940 I 0.751
Gorai.009G255400 Gossypium raimondii Gorai.009G255400 I 0.749
cassava19959.m1 Manihot esculenta cassava19959.m1 I 0.748
GLYMA06G17180 Glycine max GLYMA06G17180 I 0.748
gene06407-v1.0-hybrid Fragaria vesca gene06407-v1.0-hybrid I 0.748
POPTR_0012s11030 Populus trichocarpa POPTR_0012s11030 I 0.748
TCM_014762 Theobroma cacao TCM_014762 I 0.748
SapurV1A.0517s0130 Salix purpurea SapurV1A.0517s0130 I 0.748
Bra037794 Brassica rapa Bra037794 I 0.748
chr1.CM0094.670.nd Lotus japonicus chr1.CM0094.670.nd I 0.748
MTR_6g037610 Medicago truncatula MTR_6g037610 I 0.747
BRADI2G56140 Brachypodium distachyon BRADI2G56140 I 0.747
Ca_01387 Cicer arietinum Ca_01387 I 0.747
MTR_3g098580 Medicago truncatula MTR_3g098580 I 0.747
Ca_19135 Cicer arietinum Ca_19135 I 0.746
OGLUM11G04050 Oryza glumaepatula OGLUM11G04050 I 0.745
ONIVA11G04340 Oryza nivara ONIVA11G04340 I 0.745
GLYMA06G15341 Glycine max GLYMA06G15341 I 0.745
MDP0000894895 Malus domestica MDP0000894895 I 0.745
ORGLA11G0040400 Oryza glaberrima ORGLA11G0040400 I 0.745
OS11G0168500 Oryza sativa OS11G0168500 I 0.745
BGIOSGA034432 Oryza indica BGIOSGA034432 I 0.745
Bo3g004290 Brassica oleracea Bo3g004290 I 0.745
ORUFI11G04200 Oryza rufipogon ORUFI11G04200 I 0.745
Bostr.0568s0320 Boechera stricta Bostr.0568s0320 I 0.744
ABR1 Arabidopsis lyrata fgenesh2_kg.8__2506__AT5G64750.1 I 0.744
Bostr.7200s0089 Boechera stricta Bostr.7200s0089 I 0.744
Solyc12g042210.1 Solanum lycopersicum Solyc12g042210.1 I 0.744
Sb05g004170 Sorghum bicolor Sb05g004170 I 0.744
Cagra.2438s0028 Capsella grandiflora Cagra.2438s0028 I 0.744
Thhalv10004333m.g Eutrema salsugineum Thhalv10004333m.g I 0.744
Bo3g100930 Brassica oleracea Bo3g100930 I 0.744
Bo2g166380 Brassica oleracea Bo2g166380 I 0.744
Bra031903 Brassica rapa Bra031903 I 0.744
Bra024325 Brassica rapa Bra024325 I 0.744
ABR1 Arabidopsis thaliana AT5G64750 D 0.744
Carubv10026540m.g Capsella rubella Carubv10026540m.g I 0.744
GRMZM2G076896 Zea mays GRMZM2G076896 I 0.742
Cagra.3842s0001 Capsella grandiflora Cagra.3842s0001 I 0.742
Carubv10010478m.g Capsella rubella Carubv10010478m.g I 0.742
SapurV1A.0826s0010 Salix purpurea SapurV1A.0826s0010 I 0.742
Gorai.008G210600 Gossypium raimondii Gorai.008G210600 I 0.742
Cla003851 Citrullus lanatus Cla003851 I 0.742
Cucsa.365850 Cucumis sativus Cucsa.365850 I 0.742
Thhalv10015583m.g Eutrema salsugineum Thhalv10015583m.g I 0.741
Bostr.13129s0235 Boechera stricta Bostr.13129s0235 I 0.741
Cagra.2662s0009 Capsella grandiflora Cagra.2662s0009 I 0.741
Bra009272 Brassica rapa Bra009272 I 0.741
Bo9g175390 Brassica oleracea Bo9g175390 I 0.741
fgenesh2_kg.6__690__AT5G07310.1 Arabidopsis lyrata fgenesh2_kg.6__690__AT5G07310.1 I 0.741
Carubv10002723m.g Capsella rubella Carubv10002723m.g I 0.741
Pavir.Cb02005 Panicum virgatum Pavir.Cb02005 I 0.740
Pavir.J04335 Panicum virgatum Pavir.J04335 I 0.740
Pavir.J02402 Panicum virgatum Pavir.J02402 I 0.740
POPTR_0007s07090 Populus trichocarpa POPTR_0007s07090 I 0.740
orange1.1g039390m.g Citrus sinensis orange1.1g039390m.g I 0.739
Pavir.Hb01784 Panicum virgatum Pavir.Hb01784 I 0.739
Pavir.Ha01720 Panicum virgatum Pavir.Ha01720 I 0.739
Si026709m.g Setaria italica Si026709m.g I 0.739
Bo2g008570 Brassica oleracea Bo2g008570 I 0.739
Ciclev10026032m.g Citrus clementina Ciclev10026032m.g I 0.739
30147.m014403 Ricinus communis 30147.m014403 I 0.738
Cla008608 Citrullus lanatus Cla008608 I 0.738
Bra005932 Brassica rapa Bra005932 I 0.738
Ciclev10032575m.g Citrus clementina Ciclev10032575m.g I 0.738
orange1.1g036963m.g Citrus sinensis orange1.1g036963m.g I 0.738
Cla019618 Citrullus lanatus Cla019618 I 0.737
Cucsa.156890 Cucumis sativus Cucsa.156890 I 0.737
Ciclev10018158m.g Citrus clementina Ciclev10018158m.g I 0.736
ERF110 Arabidopsis lyrata fgenesh2_kg.8__881__AT5G50080.1 I 0.736
TCM_001301 Theobroma cacao TCM_001301 I 0.736
ERF110 Arabidopsis thaliana AT5G50080 I 0.736
evm.TU.supercontig_13.175 Carica papaya evm.TU.supercontig_13.175 I 0.736
LPERR12G03800 Leersia perrieri LPERR12G03800 I 0.735
orange1.1g005229m.g Citrus sinensis orange1.1g005229m.g I 0.735
Gorai.011G114900 Gossypium raimondii Gorai.011G114900 I 0.735
Ciclev10003903m.g Citrus clementina Ciclev10003903m.g I 0.735
PRUPE_ppa008772mg Prunus persica PRUPE_ppa008772mg I 0.735
LjT03L06.60.nd Lotus japonicus LjT03L06.60.nd I 0.733
Pm024604 Prunus mume Pm024604 I 0.733
Cucsa.101370 Cucumis sativus Cucsa.101370 I 0.733
chr4.CM0175.50.nd Lotus japonicus chr4.CM0175.50.nd I 0.733
Lus10022426.g Linum usitatissimum Lus10022426.g I 0.732
GLYMA16G26320 Glycine max GLYMA16G26320 I 0.731
GLYMA02G07310 Glycine max GLYMA02G07310 I 0.731
cassava10717.m1 Manihot esculenta cassava10717.m1 I 0.731
GLYMA05G32040 Glycine max GLYMA05G32040 I 0.731
Aquca_043_00039 Aquilegia coerulea Aquca_043_00039 I 0.730
MTR_6g033255 Medicago truncatula MTR_6g033255 I 0.730
ERF115 Arabidopsis thaliana AT5G07310 D 0.730
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I 0.730
Gorai.003G048800 Gossypium raimondii Gorai.003G048800 I 0.729
SapurV1A.3099s0010 Salix purpurea SapurV1A.3099s0010 I 0.729
Cla007885 Citrullus lanatus Cla007885 I 0.729
GSMUA_Achr6G18020_001 Musa acuminata GSMUA_Achr6G18020_001 I 0.727
GRMZM2G544539 Zea mays GRMZM2G544539 I 0.727
MTR_8g092460 Medicago truncatula MTR_8g092460 I 0.727
Pavir.J17038 Panicum virgatum Pavir.J17038 I 0.726
Gorai.007G045100 Gossypium raimondii Gorai.007G045100 I 0.726
Cla007205 Citrullus lanatus Cla007205 I 0.725
Cucsa.349200 Cucumis sativus Cucsa.349200 I 0.725
Aquca_023_00168 Aquilegia coerulea Aquca_023_00168 I 0.723
AMTR_s00017p00232330 Amborella trichopoda AMTR_s00017p00232330 I 0.722
Lus10005805.g Linum usitatissimum Lus10005805.g I 0.721
ABR1 Vitis vinifera VIT_07s0031g01980 I 0.721
Cucsa.250290 Cucumis sativus Cucsa.250290 I 0.721
Lus10006796.g Linum usitatissimum Lus10006796.g I 0.721
GSMUA_Achr8G08000_001 Musa acuminata GSMUA_Achr8G08000_001 I 0.720
TCM_017352 Theobroma cacao TCM_017352 I 0.719
GLYMA16G05190 Glycine max GLYMA16G05190 I 0.719
GLYMA19G27790 Glycine max GLYMA19G27790 I 0.719
Ca_09638 Cicer arietinum Ca_09638 I 0.719
PGSC0003DMG400014240 Solanum tuberosum PGSC0003DMG400014240 I 0.718
gene06406-v1.0-hybrid Fragaria vesca gene06406-v1.0-hybrid I 0.718
Eucgr.I00292 Eucalyptus grandis Eucgr.I00292 I 0.718
30131.m006971 Ricinus communis 30131.m006971 I 0.718
cassava45576.m1 Manihot esculenta cassava45576.m1 I 0.718
Solyc03g118190.2 Solanum lycopersicum Solyc03g118190.2 I 0.718
chr1.CM1880.220.nd Lotus japonicus chr1.CM1880.220.nd I 0.718
Bostr.12302s0024 Boechera stricta Bostr.12302s0024 I 0.717
Bra019622 Brassica rapa Bra019622 I 0.717
Bra028703 Brassica rapa Bra028703 I 0.716
Bostr.15774s0146 Boechera stricta Bostr.15774s0146 I 0.715
VIT_14s0068g01040 Vitis vinifera VIT_14s0068g01040 I 0.713
PGSC0003DMG400019693 Solanum tuberosum PGSC0003DMG400019693 I 0.712
Gorai.008G075600 Gossypium raimondii Gorai.008G075600 I 0.712
RRTF1 Vitis vinifera VIT_03s0063g00460 I 0.711
GSMUA_Achr6G02310_001 Musa acuminata GSMUA_Achr6G02310_001 I 0.709
Bo2g161710 Brassica oleracea Bo2g161710 I 0.707
Thhalv10005416m.g Eutrema salsugineum Thhalv10005416m.g I 0.707
Bo3g109240 Brassica oleracea Bo3g109240 I 0.707
scaffold_802838.1 Arabidopsis lyrata scaffold_802838.1 I 0.707
ERF114 Arabidopsis thaliana AT5G61890 I 0.707
Carubv10027012m.g Capsella rubella Carubv10027012m.g I 0.707
Cagra.4553s0019 Capsella grandiflora Cagra.4553s0019 I 0.707
Ca_21773 Cicer arietinum Ca_21773 I 0.707
Bostr.26833s0047 Boechera stricta Bostr.26833s0047 I 0.707
Bra029302 Brassica rapa Bra029302 I 0.707
LPERR02G14620 Leersia perrieri LPERR02G14620 I 0.704
OBART02G18470 Oryza barthii OBART02G18470 I 0.704
LPERR11G03740 Leersia perrieri LPERR11G03740 I 0.703
Traes_5BL_60FC12DA6 Triticum aestivum Traes_5BL_60FC12DA6 I 0.703
Traes_5BS_80C46D9C4 Triticum aestivum Traes_5BS_80C46D9C4 I 0.703
MLOC_68290 Hordeum vulgare MLOC_68290 I 0.703
Aquca_013_00161 Aquilegia coerulea Aquca_013_00161 I 0.703
ORUFI02G19470 Oryza rufipogon ORUFI02G19470 I 0.701
BGIOSGA006362 Oryza indica BGIOSGA006362 I 0.701
Si018024m.g Setaria italica Si018024m.g I 0.701
OPUNC02G16450 Oryza punctata OPUNC02G16450 I 0.701
Sb04g021160 Sorghum bicolor Sb04g021160 I 0.701
ONIVA02G20490 Oryza nivara ONIVA02G20490 I 0.701
Eucgr.K02193 Eucalyptus grandis Eucgr.K02193 I 0.700
Eucgr.K02780 Eucalyptus grandis Eucgr.K02780 I 0.700
Eucgr.H04892 Eucalyptus grandis Eucgr.H04892 I 0.699
Pavir.Aa02595 Panicum virgatum Pavir.Aa02595 I 0.699
Eucgr.G01970 Eucalyptus grandis Eucgr.G01970 I 0.698
Solyc04g051360.2 Solanum lycopersicum Solyc04g051360.2 I 0.697
GLYMA05G33440 Glycine max GLYMA05G33440 I 0.694
Ciclev10026052m.g Citrus clementina Ciclev10026052m.g I 0.693
orange1.1g020801m.g Citrus sinensis orange1.1g020801m.g I 0.693
MDP0000668122 Malus domestica MDP0000668122 I 0.692
ERF11 Arabidopsis lyrata fgenesh2_kg.1__3005__AT1G28370.1 I 0.691
MDP0000254227 Malus domestica MDP0000254227 I 0.690
cassava8409.m1 Manihot esculenta cassava8409.m1 I 0.689
Pm026408 Prunus mume Pm026408 I 0.688
GRMZM2G016434 Zea mays GRMZM2G016434 I 0.687
PRUPE_ppa017002mg Prunus persica PRUPE_ppa017002mg I 0.686
GSMUA_Achr2G17810_001 Musa acuminata GSMUA_Achr2G17810_001 I 0.684
mgf021642m Mimulus guttatus mgf021642m I 0.684
cassava40570.m1 Manihot esculenta cassava40570.m1 I 0.684
VIT_07s0031g00710 Vitis vinifera VIT_07s0031g00710 I 0.682
PGSC0003DMG400023593 Solanum tuberosum PGSC0003DMG400023593 I 0.682
Solyc04g012050.2 Solanum lycopersicum Solyc04g012050.2 I 0.682
GSMUA_Achr10G19950_001 Musa acuminata GSMUA_Achr10G19950_001 I 0.681
PDK_20s1354201g001 Phoenix dactylifera PDK_20s1354201g001 I 0.680
ATERF2 Arabidopsis lyrata fgenesh2_kg.8__70__AT5G47220.1 I 0.678
Si013986m.g Setaria italica Si013986m.g I 0.678
SapurV1A.0471s0080 Salix purpurea SapurV1A.0471s0080 I 0.677
Rap2.6L Vitis vinifera VIT_17s0000g00200 I 0.677
SapurV1A.0627s0010 Salix purpurea SapurV1A.0627s0010 I 0.677