CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
MTR_3g105510
(
Medicago truncatula
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
MTR_3g105510
T002839_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.752
0.900
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.752
0.900
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.730
0.840
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.730
0.840
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES73498
AP2
35
86
KKYKGVRLRKWGKWVSEIRLPNSRERIWLGSYDSAEKAAKAFDAALYCLRGR
Links
Other
AP2
family TFs
Other
Medicago truncatula
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_3g105480
Medicago truncatula
MTR_3g105480
I
0.817
Eucgr.C03175
Eucalyptus grandis
Eucgr.C03175
I
0.802
Solyc06g054630.1
Solanum lycopersicum
Solyc06g054630.1
I
0.778
PGSC0003DMG400030781
Solanum tuberosum
PGSC0003DMG400030781
I
0.778
TCM_037415
Theobroma cacao
TCM_037415
I
0.768
Bra016518
Brassica rapa
Bra016518
I
0.762
Bo8g068370
Brassica oleracea
Bo8g068370
I
0.762
Si008104m.g
Setaria italica
Si008104m.g
I
0.762
GSMUA_Achr9G14360_001
Musa acuminata
GSMUA_Achr9G14360_001
I
0.760
Lus10038082.g
Linum usitatissimum
Lus10038082.g
I
0.760
Lus10009798.g
Linum usitatissimum
Lus10009798.g
I
0.760
gene12919-v1.0-hybrid
Fragaria vesca
gene12919-v1.0-hybrid
I
0.757
Gorai.001G019100
Gossypium raimondii
Gorai.001G019100
I
0.757
Gorai.004G285900
Gossypium raimondii
Gorai.004G285900
I
0.756
cassava25057.valid.m1
Manihot esculenta
cassava25057.valid.m1
I
0.755
cassava10604.m1
Manihot esculenta
cassava10604.m1
I
0.755
POPTR_0006s14100
Populus trichocarpa
POPTR_0006s14100
I
0.755
29739.m003716
Ricinus communis
29739.m003716
I
0.754
Pm027117
Prunus mume
Pm027117
I
0.754
PRUPE_ppa011336mg
Prunus persica
PRUPE_ppa011336mg
I
0.754
Carubv10011394m.g
Capsella rubella
Carubv10011394m.g
I
0.752
ERF017
Arabidopsis thaliana
AT1G19210
D
0.752
fgenesh2_kg.1__2098__AT1G19210.1
Arabidopsis lyrata
fgenesh2_kg.1__2098__AT1G19210.1
I
0.752
Cagra.1961s0079
Capsella grandiflora
Cagra.1961s0079
I
0.752
SapurV1A.0373s0040
Salix purpurea
SapurV1A.0373s0040
I
0.751
POPTR_0006s23480
Populus trichocarpa
POPTR_0006s23480
I
0.751
SapurV1A.2229s0010
Salix purpurea
SapurV1A.2229s0010
I
0.751
cassava20547.m1
Manihot esculenta
cassava20547.m1
I
0.750
Eucgr.C00780
Eucalyptus grandis
Eucgr.C00780
I
0.749
evm.TU.supercontig_266.5
Carica papaya
evm.TU.supercontig_266.5
I
0.749
SapurV1A.0057s0300
Salix purpurea
SapurV1A.0057s0300
I
0.749
GLYMA04G06095
Glycine max
GLYMA04G06095
I
0.748
GLYMA06G06101
Glycine max
GLYMA06G06101
I
0.748
Ca_01683
Cicer arietinum
Ca_01683
I
0.747
VIT_11s0016g00660
Vitis vinifera
VIT_11s0016g00660
I
0.747
SapurV1A.0521s0050
Salix purpurea
SapurV1A.0521s0050
I
0.747
POPTR_0006s14090
Populus trichocarpa
POPTR_0006s14090
I
0.746
Gorai.010G091100
Gossypium raimondii
Gorai.010G091100
I
0.746
Cla011318
Citrullus lanatus
Cla011318
I
0.746
Cucsa.141980
Cucumis sativus
Cucsa.141980
I
0.746
29739.m003647
Ricinus communis
29739.m003647
I
0.745
Aquca_076_00039
Aquilegia coerulea
Aquca_076_00039
I
0.745
Lus10034885.g
Linum usitatissimum
Lus10034885.g
I
0.741
Lus10033420.g
Linum usitatissimum
Lus10033420.g
I
0.741
OPUNC08G14840
Oryza punctata
OPUNC08G14840
I
0.740
ONIVA08G18470
Oryza nivara
ONIVA08G18470
I
0.740
ORUFI08G18850
Oryza rufipogon
ORUFI08G18850
I
0.740
OGLUM08G17690
Oryza glumaepatula
OGLUM08G17690
I
0.740
Pavir.Fa00741
Panicum virgatum
Pavir.Fa00741
I
0.740
BGIOSGA028781
Oryza indica
BGIOSGA028781
I
0.740
OBART08G16950
Oryza barthii
OBART08G16950
I
0.740
Pavir.Fb01602
Panicum virgatum
Pavir.Fb01602
I
0.740
OS08G0454000
Oryza sativa
OS08G0454000
I
0.740
Si015027m.g
Setaria italica
Si015027m.g
I
0.740
LPERR08G14000
Leersia perrieri
LPERR08G14000
I
0.740
GRMZM2G163745
Zea mays
GRMZM2G163745
I
0.740
OB08G24280
Oryza brachyantha
OB08G24280
I
0.740
ORA47
Vitis vinifera
VIT_04s0008g02230
I
0.739
Bo8g102870
Brassica oleracea
Bo8g102870
I
0.738
MDP0000649022
Malus domestica
MDP0000649022
I
0.738
Bra031069
Brassica rapa
Bra031069
I
0.738
chr5.CM0040.40.nd
Lotus japonicus
chr5.CM0040.40.nd
I
0.737
Thhalv10009812m.g
Eutrema salsugineum
Thhalv10009812m.g
I
0.737
BRADI3G37544
Brachypodium distachyon
BRADI3G37544
I
0.735
POPTR_0018s08320
Populus trichocarpa
POPTR_0018s08320
I
0.735
MTR_1g014800
Medicago truncatula
MTR_1g014800
I
0.733
TRAES3BF084200010CFD_g
Triticum aestivum
TRAES3BF084200010CFD_g
I
0.733
mgf024162m
Mimulus guttatus
mgf024162m
I
0.733
mgf021940m
Mimulus guttatus
mgf021940m
I
0.731
MDP0000704216
Malus domestica
MDP0000704216
I
0.731
F775_23111
Aegilops tauschii
F775_23111
I
0.731
Ciclev10010348m.g
Citrus clementina
Ciclev10010348m.g
I
0.731
ERF018
Arabidopsis thaliana
AT1G74930
D
0.730
Bostr.3288s0141
Boechera stricta
Bostr.3288s0141
I
0.730
Bra015882
Brassica rapa
Bra015882
I
0.730
ORA47
Arabidopsis lyrata
fgenesh2_kg.2__1761__AT1G74930.1
I
0.730
Bostr.7128s0526
Boechera stricta
Bostr.7128s0526
I
0.728
Bo6g119120
Brassica oleracea
Bo6g119120
I
0.727
TCM_037486
Theobroma cacao
TCM_037486
I
0.727
MTR_1g014820
Medicago truncatula
MTR_1g014820
I
0.725
MTR_1g014860
Medicago truncatula
MTR_1g014860
I
0.725
Ca_09124
Cicer arietinum
Ca_09124
I
0.724
Carubv10020965m.g
Capsella rubella
Carubv10020965m.g
I
0.723
Eucgr.C03297
Eucalyptus grandis
Eucgr.C03297
I
0.723
Cagra.0402s0035
Capsella grandiflora
Cagra.0402s0035
I
0.723
Gorai.001G016800
Gossypium raimondii
Gorai.001G016800
I
0.723
Bo6g086740
Brassica oleracea
Bo6g086740
I
0.723
Bra003780
Brassica rapa
Bra003780
I
0.723
GRMZM2G097081
Zea mays
GRMZM2G097081
I
0.722
Pavir.J00593
Panicum virgatum
Pavir.J00593
I
0.722
Pavir.Aa00296
Panicum virgatum
Pavir.Aa00296
I
0.721
orange1.1g029068m.g
Citrus sinensis
orange1.1g029068m.g
I
0.721
Ciclev10009540m.g
Citrus clementina
Ciclev10009540m.g
I
0.721
Si019636m.g
Setaria italica
Si019636m.g
I
0.721
GLYMA17G33535
Glycine max
GLYMA17G33535
I
0.720
Cla007584
Citrullus lanatus
Cla007584
I
0.720
Traes_6DL_FA861D610
Triticum aestivum
Traes_6DL_FA861D610
I
0.720
Cucsa.271180
Cucumis sativus
Cucsa.271180
I
0.720
mgf025452m
Mimulus guttatus
mgf025452m
I
0.720
GLYMA09G08330
Glycine max
GLYMA09G08330
I
0.716
GSMUA_Achr5G05160_001
Musa acuminata
GSMUA_Achr5G05160_001
I
0.716
Bo3g015600
Brassica oleracea
Bo3g015600
I
0.716
Bra006599
Brassica rapa
Bra006599
I
0.716
GLYMA17G05240
Glycine max
GLYMA17G05240
I
0.716
Solyc12g009240.1
Solanum lycopersicum
Solyc12g009240.1
I
0.715
Bra002377
Brassica rapa
Bra002377
I
0.715
Carubv10001903m.g
Capsella rubella
Carubv10001903m.g
I
0.715
Bo9g149820
Brassica oleracea
Bo9g149820
I
0.715
GLYMA14G12505
Glycine max
GLYMA14G12505
I
0.715
Bostr.26527s0082
Boechera stricta
Bostr.26527s0082
I
0.715
chr1.CM0133.1010.nc
Lotus japonicus
chr1.CM0133.1010.nc
I
0.715
PGSC0003DMG400002899
Solanum tuberosum
PGSC0003DMG400002899
I
0.715
scaffold_602234.1
Arabidopsis lyrata
scaffold_602234.1
I
0.715
GLYMA13G17250
Glycine max
GLYMA13G17250
I
0.714
GLYMA15G19910
Glycine max
GLYMA15G19910
I
0.712
Thhalv10019652m.g
Eutrema salsugineum
Thhalv10019652m.g
I
0.712
OMERI03G32210
Oryza meridionalis
OMERI03G32210
I
0.711
OGLUM06G06520
Oryza glumaepatula
OGLUM06G06520
I
0.711
ONIVA06G07190
Oryza nivara
ONIVA06G07190
I
0.711
AMTR_s00007p00268280
Amborella trichopoda
AMTR_s00007p00268280
I
0.711
OBART06G06190
Oryza barthii
OBART06G06190
I
0.711
ORGLA06G0057200
Oryza glaberrima
ORGLA06G0057200
I
0.711
BGIOSGA022471
Oryza indica
BGIOSGA022471
I
0.710
Thhalv10015465m.g
Eutrema salsugineum
Thhalv10015465m.g
I
0.710
ORUFI06G06480
Oryza rufipogon
ORUFI06G06480
I
0.710
ERF016
Arabidopsis thaliana
AT5G21960
I
0.709
MTR_2g043050
Medicago truncatula
MTR_2g043050
I
0.709
Cla022291
Citrullus lanatus
Cla022291
I
0.706
Cucsa.055920
Cucumis sativus
Cucsa.055920
I
0.706
Bo2g023630
Brassica oleracea
Bo2g023630
I
0.705
Sb07g022265
Sorghum bicolor
Sb07g022265
I
0.705
Bra020162
Brassica rapa
Bra020162
I
0.704
OS02G0781300
Oryza sativa
OS02G0781300
I
0.703
BGIOSGA005486
Oryza indica
BGIOSGA005486
I
0.703
OPUNC02G32160
Oryza punctata
OPUNC02G32160
I
0.703
OGLUM02G35980
Oryza glumaepatula
OGLUM02G35980
I
0.703
OMERI01G37050
Oryza meridionalis
OMERI01G37050
I
0.703
ONIVA02G36910
Oryza nivara
ONIVA02G36910
I
0.703
ORGLA02G0301600
Oryza glaberrima
ORGLA02G0301600
I
0.703
ORUFI02G36340
Oryza rufipogon
ORUFI02G36340
I
0.703
Bra025719
Brassica rapa
Bra025719
I
0.702
Gorai.013G222700
Gossypium raimondii
Gorai.013G222700
I
0.700
Ca_19295
Cicer arietinum
Ca_19295
I
0.697
MTR_2g043040
Medicago truncatula
MTR_2g043040
I
0.695
GSMUA_AchrUn_randomG02200_001
Musa acuminata
GSMUA_AchrUn_randomG02200_001
I
0.695
MTR_2g043030
Medicago truncatula
MTR_2g043030
I
0.695
Ca_19297
Cicer arietinum
Ca_19297
I
0.694
AMTR_s00007p00268460
Amborella trichopoda
AMTR_s00007p00268460
I
0.693
Ca_19296
Cicer arietinum
Ca_19296
I
0.692
LPERR02G28660
Leersia perrieri
LPERR02G28660
I
0.692
OGLUM06G08330
Oryza glumaepatula
OGLUM06G08330
N
0.690
Traes_6AL_E6DAE246D
Triticum aestivum
Traes_6AL_E6DAE246D
I
0.690
OMERI06G09430
Oryza meridionalis
OMERI06G09430
N
0.690
AMTR_s00025p00218200
Amborella trichopoda
AMTR_s00025p00218200
N
0.687
OPUNC06G07550
Oryza punctata
OPUNC06G07550
N
0.684
ONIVA06G07220
Oryza nivara
ONIVA06G07220
N
0.683
OGLUM06G06550
Oryza glumaepatula
OGLUM06G06550
N
0.682
OBART06G06220
Oryza barthii
OBART06G06220
N
0.681
ORGLA06G0057300
Oryza glaberrima
ORGLA06G0057300
N
0.681
OMERI03G32220
Oryza meridionalis
OMERI03G32220
N
0.681
OBART06G06230
Oryza barthii
OBART06G06230
N
0.680
ORGLA06G0057400
Oryza glaberrima
ORGLA06G0057400
N
0.680
Pavir.Da01882
Panicum virgatum
Pavir.Da01882
N
0.680
PK18548.1
Cannabis sativa
PK18548.1
I
0.679