CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_5g083340
(
Medicago truncatula
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
MTR_5g083340
T002899_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH
DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.754
0.898
Q8H769_WHEAT
M09721_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1_01
0.715
0.837
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.700
0.816
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.700
0.816
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.700
0.816
DREB2A
M06655_2.00
Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN
Dap-seq
OMalley et al.(2016)
DREB2_col_a
0.685
0.857
DREB2A
M06656_2.00
Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN
Dap-seq
OMalley et al.(2016)
DREB2_colamp_a
0.685
0.857
Q1ESI9_MAIZE
M09714_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB2A_02
0.684
0.796
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.677
0.755
PK08602.1
M01098_2.00
Cannabis sativa
NYCACCGCYN
NRGCGGTGRN
PBM
Lambert et al.(2019)
pTH11421
0.677
0.755
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES99659
AP2
83
134
NKYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAQEAALAYDYAARAMYGP
Links
Other
AP2
family TFs
Other
Medicago truncatula
TFs
214 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_5g083330
Medicago truncatula
MTR_5g083330
I
0.766
PDK_20s1493381g003
Phoenix dactylifera
PDK_20s1493381g003
I
0.766
SapurV1A.1286s0030
Salix purpurea
SapurV1A.1286s0030
I
0.758
SapurV1A.2268s0010
Salix purpurea
SapurV1A.2268s0010
I
0.758
GSMUA_Achr9G04630_001
Musa acuminata
GSMUA_Achr9G04630_001
I
0.756
PK07402.1
Cannabis sativa
PK07402.1
D
0.754
GSMUA_AchrUn_randomG14580_001
Musa acuminata
GSMUA_AchrUn_randomG14580_001
I
0.753
POPTR_0010s19100
Populus trichocarpa
POPTR_0010s19100
I
0.752
evm.TU.supercontig_19.121
Carica papaya
evm.TU.supercontig_19.121
I
0.750
SapurV1A.0673s0120
Salix purpurea
SapurV1A.0673s0120
I
0.750
SapurV1A.1420s0050
Salix purpurea
SapurV1A.1420s0050
I
0.750
GSMUA_Achr11G24820_001
Musa acuminata
GSMUA_Achr11G24820_001
I
0.749
Ciclev10032029m.g
Citrus clementina
Ciclev10032029m.g
I
0.745
orange1.1g019546m.g
Citrus sinensis
orange1.1g019546m.g
I
0.745
Lus10023633.g
Linum usitatissimum
Lus10023633.g
I
0.745
Lus10034902.g
Linum usitatissimum
Lus10034902.g
I
0.745
POPTR_0008s07360
Populus trichocarpa
POPTR_0008s07360
I
0.743
cassava19475.valid.m1
Manihot esculenta
cassava19475.valid.m1
I
0.743
VIT_13s0067g01960
Vitis vinifera
VIT_13s0067g01960
I
0.743
Cucsa.136780
Cucumis sativus
Cucsa.136780
I
0.739
Cla006713
Citrullus lanatus
Cla006713
I
0.738
PGSC0003DMG400027117
Solanum tuberosum
PGSC0003DMG400027117
I
0.737
Solyc05g052410.1
Solanum lycopersicum
Solyc05g052410.1
I
0.737
Thhalv10016913m.g
Eutrema salsugineum
Thhalv10016913m.g
I
0.736
Eucgr.K02952
Eucalyptus grandis
Eucgr.K02952
I
0.734
Eucgr.G03094
Eucalyptus grandis
Eucgr.G03094
I
0.732
29729.m002292
Ricinus communis
29729.m002292
I
0.730
OGLUM01G04560
Oryza glumaepatula
OGLUM01G04560
I
0.720
OMERI01G04110
Oryza meridionalis
OMERI01G04110
I
0.720
OLONG_014228
Oryza longistaminata
OLONG_014228
I
0.720
Lus10012226.g
Linum usitatissimum
Lus10012226.g
I
0.720
GSMUA_Achr6G32780_001
Musa acuminata
GSMUA_Achr6G32780_001
I
0.720
BGIOSGA002846
Oryza indica
BGIOSGA002846
I
0.720
ONIVA01G04630
Oryza nivara
ONIVA01G04630
I
0.720
OB01G13930
Oryza brachyantha
OB01G13930
I
0.720
OBART01G04210
Oryza barthii
OBART01G04210
I
0.720
ORUFI01G04360
Oryza rufipogon
ORUFI01G04360
I
0.720
DREB2A
Oryza sativa
OS01G0165000
I
0.720
ORGLA01G0037700
Oryza glaberrima
ORGLA01G0037700
I
0.720
OPUNC01G03970
Oryza punctata
OPUNC01G03970
I
0.720
gene01985-v1.0-hybrid
Fragaria vesca
gene01985-v1.0-hybrid
I
0.719
PRUPE_ppa007606mg
Prunus persica
PRUPE_ppa007606mg
I
0.717
Pm018989
Prunus mume
Pm018989
I
0.717
GSMUA_Achr5G28050_001
Musa acuminata
GSMUA_Achr5G28050_001
I
0.716
MLOC_66686
Hordeum vulgare
MLOC_66686
I
0.715
Q8H769_WHEAT
Triticum aestivum
Q8H769_WHEAT
D
0.715
TRAES3BF064700080CFD_g
Triticum aestivum
TRAES3BF064700080CFD_g
I
0.715
TRIUR3_17973
Triticum urartu
TRIUR3_17973
I
0.715
Traes_3AS_62742A0471
Triticum aestivum
Traes_3AS_62742A0471
I
0.715
F775_05774
Aegilops tauschii
F775_05774
I
0.715
MDP0000290585
Malus domestica
MDP0000290585
I
0.714
BRADI2G04000
Brachypodium distachyon
BRADI2G04000
I
0.714
Si002067m.g
Setaria italica
Si002067m.g
I
0.713
Pm015262
Prunus mume
Pm015262
I
0.713
PRUPE_ppa022733mg
Prunus persica
PRUPE_ppa022733mg
I
0.713
LPERR01G03760
Leersia perrieri
LPERR01G03760
I
0.712
Aquca_030_00214
Aquilegia coerulea
Aquca_030_00214
I
0.710
POPTR_0006s10510
Populus trichocarpa
POPTR_0006s10510
I
0.709
MDP0000153866
Malus domestica
MDP0000153866
I
0.709
gene21047-v1.0-hybrid
Fragaria vesca
gene21047-v1.0-hybrid
I
0.708
MDP0000165880
Malus domestica
MDP0000165880
I
0.708
MDP0000147009
Malus domestica
MDP0000147009
I
0.708
MDP0000446783
Malus domestica
MDP0000446783
I
0.708
Bo9g177130
Brassica oleracea
Bo9g177130
I
0.707
gw1.120.55.1
Physcomitrella patens
gw1.120.55.1
I
0.707
Sb03g004980
Sorghum bicolor
Sb03g004980
I
0.707
Bo4g190040
Brassica oleracea
Bo4g190040
I
0.706
Bra017011
Brassica rapa
Bra017011
I
0.706
Pavir.Ea00429
Panicum virgatum
Pavir.Ea00429
I
0.705
SELMODRAFT_38483
Selaginella moellendorffii
SELMODRAFT_38483
I
0.704
SELMODRAFT_27203
Selaginella moellendorffii
SELMODRAFT_27203
I
0.704
SapurV1A.0001s0300
Salix purpurea
SapurV1A.0001s0300
I
0.704
Gorai.007G271900
Gossypium raimondii
Gorai.007G271900
I
0.704
Ca_12446
Cicer arietinum
Ca_12446
I
0.703
Traes_5BL_7F0FD1538
Triticum aestivum
Traes_5BL_7F0FD1538
I
0.702
Pavir.J37967
Panicum virgatum
Pavir.J37967
I
0.702
SapurV1A.0620s0100
Salix purpurea
SapurV1A.0620s0100
I
0.701
mgf024545m
Mimulus guttatus
mgf024545m
I
0.701
DREB2D
Arabidopsis thaliana
AT1G75490
D
0.700
fgenesh2_kg.2__1828__AT1G75490.1
Arabidopsis lyrata
fgenesh2_kg.2__1828__AT1G75490.1
I
0.700
Thhalv10019142m.g
Eutrema salsugineum
Thhalv10019142m.g
I
0.700
Bostr.3288s0201
Boechera stricta
Bostr.3288s0201
I
0.700
Carubv10020960m.g
Capsella rubella
Carubv10020960m.g
I
0.700
Cagra.0799s0022
Capsella grandiflora
Cagra.0799s0022
I
0.700
PK07829.1
Cannabis sativa
PK07829.1
I
0.700
GLYMA14G07620
Glycine max
GLYMA14G07620
I
0.700
GLYMA17G37350
Glycine max
GLYMA17G37350
I
0.700
MDP0000880312
Malus domestica
MDP0000880312
I
0.700
Bra003752
Brassica rapa
Bra003752
I
0.700
Bo6g086320
Brassica oleracea
Bo6g086320
I
0.700
Bo6g119660
Brassica oleracea
Bo6g119660
I
0.700
Bra015840
Brassica rapa
Bra015840
I
0.700
evm.TU.supercontig_99.20
Carica papaya
evm.TU.supercontig_99.20
I
0.698
TCM_043275
Theobroma cacao
TCM_043275
I
0.697
Pm003634
Prunus mume
Pm003634
I
0.696
cassava41240.m1
Manihot esculenta
cassava41240.m1
I
0.696
PRUPE_ppa026176mg
Prunus persica
PRUPE_ppa026176mg
I
0.696
GLYMA02G42960
Glycine max
GLYMA02G42960
I
0.696
Ciclev10002280m.g
Citrus clementina
Ciclev10002280m.g
I
0.696
orange1.1g036655m.g
Citrus sinensis
orange1.1g036655m.g
I
0.696
GLYMA14G06080
Glycine max
GLYMA14G06080
I
0.696
30170.m014115
Ricinus communis
30170.m014115
I
0.696
cassava45031.m1
Manihot esculenta
cassava45031.m1
I
0.695
TCM_043306
Theobroma cacao
TCM_043306
I
0.695
TCM_043302
Theobroma cacao
TCM_043302
I
0.695
POPTR_0016s13380
Populus trichocarpa
POPTR_0016s13380
I
0.695
GLYMA06G45680
Glycine max
GLYMA06G45680
I
0.694
POPTR_0002s03090
Populus trichocarpa
POPTR_0002s03090
I
0.694
VIT_18s0001g13320
Vitis vinifera
VIT_18s0001g13320
I
0.694
PRUPE_ppa022996mg
Prunus persica
PRUPE_ppa022996mg
I
0.693
e_gw1.292.36.1
Physcomitrella patens
e_gw1.292.36.1
I
0.693
MDP0000295902
Malus domestica
MDP0000295902
I
0.692
Bo2g083920
Brassica oleracea
Bo2g083920
I
0.692
MDP0000141335
Malus domestica
MDP0000141335
I
0.692
TRIUR3_17409
Triticum urartu
TRIUR3_17409
I
0.692
Traes_1BL_BDF0801D01
Triticum aestivum
Traes_1BL_BDF0801D01
I
0.692
Traes_1AL_A9FB6BF52
Triticum aestivum
Traes_1AL_A9FB6BF52
I
0.692
Bra008200
Brassica rapa
Bra008200
I
0.692
mgf017629m
Mimulus guttatus
mgf017629m
I
0.692
F775_32062
Aegilops tauschii
F775_32062
I
0.692
POPTR_0005s25470
Populus trichocarpa
POPTR_0005s25470
I
0.692
GSMUA_AchrUn_randomG08690_001
Musa acuminata
GSMUA_AchrUn_randomG08690_001
I
0.691
BRADI2G29960
Brachypodium distachyon
BRADI2G29960
I
0.691
Cucsa.342750
Cucumis sativus
Cucsa.342750
I
0.690
gene16710-v1.0-hybrid
Fragaria vesca
gene16710-v1.0-hybrid
I
0.690
Cla021113
Citrullus lanatus
Cla021113
I
0.690
Pm006274
Prunus mume
Pm006274
I
0.690
Ca_10770
Cicer arietinum
Ca_10770
I
0.690
MTR_1g023170
Medicago truncatula
MTR_1g023170
I
0.690
GLYMA04G03070
Glycine max
GLYMA04G03070
I
0.690
LjSGA_063888.1
Lotus japonicus
LjSGA_063888.1
I
0.690
GLYMA06G03110
Glycine max
GLYMA06G03110
I
0.690
Si022619m.g
Setaria italica
Si022619m.g
I
0.689
MDP0000250924
Malus domestica
MDP0000250924
I
0.688
gene08479-v1.0-hybrid
Fragaria vesca
gene08479-v1.0-hybrid
I
0.688
Gorai.005G110100
Gossypium raimondii
Gorai.005G110100
I
0.688
Gorai.009G197800
Gossypium raimondii
Gorai.009G197800
I
0.688
Gorai.009G271400
Gossypium raimondii
Gorai.009G271400
I
0.687
SapurV1A.0188s0060
Salix purpurea
SapurV1A.0188s0060
I
0.687
Pavir.Cb01298
Panicum virgatum
Pavir.Cb01298
I
0.686
Bra028759
Brassica rapa
Bra028759
I
0.686
Sb09g016150
Sorghum bicolor
Sb09g016150
I
0.686
Pavir.Ca01725
Panicum virgatum
Pavir.Ca01725
I
0.686
Bo2g006960
Brassica oleracea
Bo2g006960
I
0.686
DREB2A
Arabidopsis thaliana
AT5G05410
D
0.685
Q1ESI9_MAIZE
Zea mays
Q1ESI9_MAIZE
D
0.684
MDP0000250927
Malus domestica
MDP0000250927
I
0.684
Bostr.19424s1037
Boechera stricta
Bostr.19424s1037
I
0.684
GRMZM2G006745
Zea mays
GRMZM2G006745
I
0.684
evm.TU.supercontig_92.16
Carica papaya
evm.TU.supercontig_92.16
I
0.683
Lus10011319.g
Linum usitatissimum
Lus10011319.g
I
0.683
Lus10012210.g
Linum usitatissimum
Lus10012210.g
I
0.683
Thhalv10021161m.g
Eutrema salsugineum
Thhalv10021161m.g
I
0.682
PRUPE_ppa023248mg
Prunus persica
PRUPE_ppa023248mg
I
0.682
TCM_034132
Theobroma cacao
TCM_034132
I
0.682
Aquca_013_00679
Aquilegia coerulea
Aquca_013_00679
I
0.682
GRMZM2G156737
Zea mays
GRMZM2G156737
I
0.681
PGSC0003DMG400028700
Solanum tuberosum
PGSC0003DMG400028700
I
0.681
Solyc04g050750.1
Solanum lycopersicum
Solyc04g050750.1
I
0.681
DREB2C
Arabidopsis lyrata
scaffold_402826.1
I
0.681
mgf007881m
Mimulus guttatus
mgf007881m
I
0.680
Cucsa.119440
Cucumis sativus
Cucsa.119440
I
0.680
Cla001755
Citrullus lanatus
Cla001755
I
0.680
Cla012194
Citrullus lanatus
Cla012194
I
0.680
OMERI03G05220
Oryza meridionalis
OMERI03G05220
I
0.679
ONIVA03G05350
Oryza nivara
ONIVA03G05350
I
0.679
BGIOSGA011963
Oryza indica
BGIOSGA011963
I
0.679
BRADI1G72990
Brachypodium distachyon
BRADI1G72990
I
0.679
GRMZM2G399098
Zea mays
GRMZM2G399098
I
0.679
AMTR_s00022p00250320
Amborella trichopoda
AMTR_s00022p00250320
I
0.679
OBART03G05550
Oryza barthii
OBART03G05550
I
0.679
Bostr.13129s0423
Boechera stricta
Bostr.13129s0423
I
0.679
OPUNC03G05230
Oryza punctata
OPUNC03G05230
I
0.679
Traes_4AS_0D75149B5
Triticum aestivum
Traes_4AS_0D75149B5
I
0.679
OGLUM03G05490
Oryza glumaepatula
OGLUM03G05490
I
0.679
Cagra.1504s0045
Capsella grandiflora
Cagra.1504s0045
I
0.679
Carubv10013771m.g
Capsella rubella
Carubv10013771m.g
I
0.679
Pavir.Ia04341
Panicum virgatum
Pavir.Ia04341
I
0.679
DREB2A
Arabidopsis lyrata
fgenesh2_kg.6__469__AT5G05410.1
I
0.679
GRMZM2G419901
Zea mays
GRMZM2G419901
I
0.679
AMTR_s00023p00044590
Amborella trichopoda
AMTR_s00023p00044590
I
0.679
Carubv10001099m.g
Capsella rubella
Carubv10001099m.g
I
0.679
Cagra.1655s0066
Capsella grandiflora
Cagra.1655s0066
I
0.679
ORUFI03G05330
Oryza rufipogon
ORUFI03G05330
I
0.679
GLYMA02G31350
Glycine max
GLYMA02G31350
I
0.679
Pavir.Ib00517
Panicum virgatum
Pavir.Ib00517
I
0.679
DREB2E
Oryza sativa
OS03G0174400
I
0.679
GLYMA10G21850
Glycine max
GLYMA10G21850
I
0.679
SapurV1A.0133s0330
Salix purpurea
SapurV1A.0133s0330
I
0.677
Thhalv10015907m.g
Eutrema salsugineum
Thhalv10015907m.g
I
0.677
DREB2G
Arabidopsis thaliana
AT5G18450
D
0.677
AMTR_s00039p00088760
Amborella trichopoda
AMTR_s00039p00088760
I
0.677
SapurV1A.0018s0040
Salix purpurea
SapurV1A.0018s0040
I
0.677
PK08602.1
Cannabis sativa
PK08602.1
D
0.677
cassava39243.m1
Manihot esculenta
cassava39243.m1
I
0.677
POPTR_0016s05360
Populus trichocarpa
POPTR_0016s05360
I
0.677
scaffold_601912.1
Arabidopsis lyrata
scaffold_601912.1
I
0.677
TCM_024756
Theobroma cacao
TCM_024756
I
0.677
GLYMA03G29530
Glycine max
GLYMA03G29530
I
0.677
PGSC0003DMG400023717
Solanum tuberosum
PGSC0003DMG400023717
I
0.677
LPERR03G04860
Leersia perrieri
LPERR03G04860
I
0.677
MTR_7g092190
Medicago truncatula
MTR_7g092190
I
0.677
GLYMA19G32380
Glycine max
GLYMA19G32380
I
0.677
VIT_08s0007g08150
Vitis vinifera
VIT_08s0007g08150
I
0.677
Ca_07264
Cicer arietinum
Ca_07264
I
0.677
Bra002159
Brassica rapa
Bra002159
I
0.677
Bo9g155940
Brassica oleracea
Bo9g155940
I
0.677
gene26463-v1.0-hybrid
Fragaria vesca
gene26463-v1.0-hybrid
I
0.677
Ciclev10005549m.g
Citrus clementina
Ciclev10005549m.g
I
0.677
Bostr.26527s0367
Boechera stricta
Bostr.26527s0367
I
0.677
27810.m000639
Ricinus communis
27810.m000639
I
0.677
cassava15495.m1
Manihot esculenta
cassava15495.m1
I
0.677
Aquca_009_00282
Aquilegia coerulea
Aquca_009_00282
I
0.677
orange1.1g042353m.g
Citrus sinensis
orange1.1g042353m.g
I
0.677