CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_5g085070
(
Medicago truncatula
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
MTR_5g085070
T002900_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF8
M01608_2.00
Arabidopsis thaliana
MGCCGNMNNN
NNNKNCGGCK
PBM
Weirauch et al.(2014)
pTH8095
0.703
0.745
ERF8
M06586_2.00
Arabidopsis thaliana
NYHDYCKCCGCCGYH
DRCGGCGGMGRHDRN
Dap-seq
OMalley et al.(2016)
ERF8_col_a
0.703
0.745
ERF8
M06587_2.00
Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN
NHDDYGRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ERF8_colamp_a
0.703
0.745
ERF11
M01606_2.00
Arabidopsis thaliana
NHGCCGNHNN
NNDNCGGCDN
PBM
Weirauch et al.(2014)
pTH8117
0.696
0.702
ERF11
M06575_2.00
Arabidopsis thaliana
NHNNHDSCGCCGYCRHHNNN
NNNDDYGRCGGCGSHDNNDN
Dap-seq
OMalley et al.(2016)
ERF11_colamp_a
0.696
0.702
ERF11
M06576_2.00
Arabidopsis thaliana
NHNYCKCCGCCGYHD
HDRCGGCGGMGRNDN
Dap-seq
OMalley et al.(2016)
ERF11_col_b
0.696
0.702
OS05G0497200
M01636_2.00
Oryza sativa
CGSCGCCR
YGGCGSCG
PBM
Weirauch et al.(2014)
pTH8640
0.693
0.766
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR
YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.690
0.766
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR
YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.682
0.745
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.682
0.745
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.682
0.745
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC
GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.677
0.745
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.677
0.745
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.677
0.745
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES99819
AP2
49
100
IRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTYDTAEQAALAYDSAAIKFRAS
Links
Other
AP2
family TFs
Other
Medicago truncatula
TFs
175 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_5g085100
Medicago truncatula
MTR_5g085100
I
0.757
SELMODRAFT_72880
Selaginella moellendorffii
SELMODRAFT_72880
I
0.725
SELMODRAFT_73144
Selaginella moellendorffii
SELMODRAFT_73144
I
0.725
Cagra.1472s0014
Capsella grandiflora
Cagra.1472s0014
I
0.719
Carubv10010374m.g
Capsella rubella
Carubv10010374m.g
I
0.719
Bra030957
Brassica rapa
Bra030957
I
0.709
Thhalv10011796m.g
Eutrema salsugineum
Thhalv10011796m.g
I
0.709
Bo5g004090
Brassica oleracea
Bo5g004090
I
0.709
Bostr.0124s0109
Boechera stricta
Bostr.0124s0109
I
0.708
ATERF-8
Arabidopsis lyrata
fgenesh2_kg.1__4394__AT1G53170.1
I
0.708
Si014474m.g
Setaria italica
Si014474m.g
I
0.708
MDP0000310904
Malus domestica
MDP0000310904
I
0.705
MDP0000236605
Malus domestica
MDP0000236605
I
0.705
ERF8
Arabidopsis thaliana
AT1G53170
D
0.703
e_gw1.117.76.1
Physcomitrella patens
e_gw1.117.76.1
I
0.701
GSMUA_AchrUn_randomG06910_001
Musa acuminata
GSMUA_AchrUn_randomG06910_001
I
0.699
e_gw1.487.2.1
Physcomitrella patens
e_gw1.487.2.1
I
0.699
MDP0000457509
Malus domestica
MDP0000457509
I
0.698
e_gw1.138.99.1
Physcomitrella patens
e_gw1.138.99.1
I
0.697
Lus10031526.g
Linum usitatissimum
Lus10031526.g
I
0.696
ERF11
Arabidopsis thaliana
AT1G28370
D
0.696
e_gw1.124.59.1
Physcomitrella patens
e_gw1.124.59.1
I
0.695
GSMUA_Achr6G01440_001
Musa acuminata
GSMUA_Achr6G01440_001
I
0.695
GSMUA_Achr4G06170_001
Musa acuminata
GSMUA_Achr4G06170_001
I
0.694
gw1.90.191.1
Physcomitrella patens
gw1.90.191.1
I
0.694
ONIVA05G22260
Oryza nivara
ONIVA05G22260
I
0.693
OPUNC05G19220
Oryza punctata
OPUNC05G19220
I
0.693
Cucsa.126860
Cucumis sativus
Cucsa.126860
I
0.693
LPERR05G17470
Leersia perrieri
LPERR05G17470
I
0.693
BGIOSGA017797
Oryza indica
BGIOSGA017797
I
0.693
OMERI05G19480
Oryza meridionalis
OMERI05G19480
I
0.693
Cucsa.190200
Cucumis sativus
Cucsa.190200
I
0.693
OGLUM05G22780
Oryza glumaepatula
OGLUM05G22780
I
0.693
Cla003319
Citrullus lanatus
Cla003319
I
0.693
Cla020002
Citrullus lanatus
Cla020002
I
0.693
ORGLA05G0187500
Oryza glaberrima
ORGLA05G0187500
I
0.693
ORUFI05G22840
Oryza rufipogon
ORUFI05G22840
I
0.693
OS05G0497200
Oryza sativa
OS05G0497200
D
0.693
GLYMA10G04190
Glycine max
GLYMA10G04190
I
0.692
estExt_gwp_gw1.C_1270048
Physcomitrella patens
estExt_gwp_gw1.C_1270048
I
0.692
Pavir.Ea03148
Panicum virgatum
Pavir.Ea03148
I
0.692
Aquca_036_00073
Aquilegia coerulea
Aquca_036_00073
I
0.692
GLYMA13G18400
Glycine max
GLYMA13G18400
I
0.692
gene29735-v1.0-hybrid
Fragaria vesca
gene29735-v1.0-hybrid
I
0.691
Si014469m.g
Setaria italica
Si014469m.g
I
0.691
GRMZM2G089995
Zea mays
GRMZM2G089995
I
0.691
PRUPE_ppa012385mg
Prunus persica
PRUPE_ppa012385mg
I
0.690
SapurV1A.0032s0450
Salix purpurea
SapurV1A.0032s0450
I
0.690
TCM_029823
Theobroma cacao
TCM_029823
I
0.690
PRUPE_ppa022435mg
Prunus persica
PRUPE_ppa022435mg
I
0.690
chr6.CM0114.130.nc
Lotus japonicus
chr6.CM0114.130.nc
I
0.690
PK17878.1
Cannabis sativa
PK17878.1
D
0.690
Pm020210
Prunus mume
Pm020210
I
0.690
mgf023367m
Mimulus guttatus
mgf023367m
I
0.690
POPTR_0011s05570
Populus trichocarpa
POPTR_0011s05570
I
0.690
Aquca_017_00628
Aquilegia coerulea
Aquca_017_00628
I
0.690
orange1.1g030994m.g
Citrus sinensis
orange1.1g030994m.g
I
0.690
evm.TU.supercontig_27.18
Carica papaya
evm.TU.supercontig_27.18
I
0.690
Gorai.011G029700
Gossypium raimondii
Gorai.011G029700
I
0.690
SapurV1A.0012s0570
Salix purpurea
SapurV1A.0012s0570
I
0.690
cassava4486.m1
Manihot esculenta
cassava4486.m1
I
0.690
Ca_00326
Cicer arietinum
Ca_00326
I
0.690
ERF12
Vitis vinifera
VIT_10s0003g00130
I
0.690
Pm010083
Prunus mume
Pm010083
I
0.690
Ciclev10016982m.g
Citrus clementina
Ciclev10016982m.g
I
0.690
cassava42971.valid.m1
Manihot esculenta
cassava42971.valid.m1
I
0.690
30190.m011323
Ricinus communis
30190.m011323
I
0.690
TCM_030804
Theobroma cacao
TCM_030804
I
0.690
Solyc02g077840.1
Solanum lycopersicum
Solyc02g077840.1
I
0.690
GLYMA13G31010
Glycine max
GLYMA13G31010
I
0.690
PGSC0003DMG400029713
Solanum tuberosum
PGSC0003DMG400029713
I
0.690
POPTR_0004s04700
Populus trichocarpa
POPTR_0004s04700
I
0.690
GLYMA15G08360
Glycine max
GLYMA15G08360
I
0.690
MTR_2g014300
Medicago truncatula
MTR_2g014300
I
0.690
Cla013723
Citrullus lanatus
Cla013723
I
0.689
POPTR_0002s04430
Populus trichocarpa
POPTR_0002s04430
I
0.689
Sb03g037085
Sorghum bicolor
Sb03g037085
I
0.689
GSMUA_Achr6G00240_001
Musa acuminata
GSMUA_Achr6G00240_001
I
0.688
GLYMA03G26520
Glycine max
GLYMA03G26520
I
0.688
GSMUA_Achr8G06870_001
Musa acuminata
GSMUA_Achr8G06870_001
I
0.687
GSMUA_Achr3G23710_001
Musa acuminata
GSMUA_Achr3G23710_001
I
0.687
Pavir.Eb03165
Panicum virgatum
Pavir.Eb03165
I
0.687
MTR_8g069360
Medicago truncatula
MTR_8g069360
I
0.687
Gorai.009G443400
Gossypium raimondii
Gorai.009G443400
I
0.686
Bo3g182770
Brassica oleracea
Bo3g182770
I
0.686
Cucsa.139820
Cucumis sativus
Cucsa.139820
I
0.686
GSMUA_AchrUn_randomG16100_001
Musa acuminata
GSMUA_AchrUn_randomG16100_001
I
0.685
Lus10033664.g
Linum usitatissimum
Lus10033664.g
I
0.685
Bra036016
Brassica rapa
Bra036016
I
0.685
Bo2g122260
Brassica oleracea
Bo2g122260
I
0.685
cassava37846.valid.m1
Manihot esculenta
cassava37846.valid.m1
I
0.685
Ca_17824
Cicer arietinum
Ca_17824
I
0.684
Cucsa.042770
Cucumis sativus
Cucsa.042770
I
0.684
Ca_22534
Cicer arietinum
Ca_22534
I
0.684
VIT_07s0141g00690
Vitis vinifera
VIT_07s0141g00690
I
0.684
SELMODRAFT_73142
Selaginella moellendorffii
SELMODRAFT_73142
I
0.684
AMTR_s00002p00264660
Amborella trichopoda
AMTR_s00002p00264660
I
0.684
Sb07g006195
Sorghum bicolor
Sb07g006195
I
0.684
Sb07g006200
Sorghum bicolor
Sb07g006200
I
0.684
SELMODRAFT_49950
Selaginella moellendorffii
SELMODRAFT_49950
I
0.684
Sb07g006190
Sorghum bicolor
Sb07g006190
I
0.684
Thhalv10021456m.g
Eutrema salsugineum
Thhalv10021456m.g
I
0.684
VIT_19s0090g01080
Vitis vinifera
VIT_19s0090g01080
I
0.684
Sb07g006210
Sorghum bicolor
Sb07g006210
I
0.684
GRMZM2G020054
Zea mays
GRMZM2G020054
I
0.684
Carubv10014552m.g
Capsella rubella
Carubv10014552m.g
I
0.684
ESR1
Arabidopsis thaliana
AT1G12980
I
0.683
Cagra.0568s0219
Capsella grandiflora
Cagra.0568s0219
I
0.683
Cagra.0952s0001
Capsella grandiflora
Cagra.0952s0001
I
0.683
Carubv10011023m.g
Capsella rubella
Carubv10011023m.g
I
0.683
evm.TU.supercontig_132.31
Carica papaya
evm.TU.supercontig_132.31
I
0.683
Carubv10010284m.g
Capsella rubella
Carubv10010284m.g
I
0.683
Bostr.13671s0153
Boechera stricta
Bostr.13671s0153
I
0.683
gw1.130.147.1
Physcomitrella patens
gw1.130.147.1
I
0.683
gw1.13.222.1
Physcomitrella patens
gw1.13.222.1
I
0.683
MTR_2g078680
Medicago truncatula
MTR_2g078680
I
0.683
ESR1
Arabidopsis lyrata
scaffold_101444.1
I
0.683
GSMUA_Achr1G18230_001
Musa acuminata
GSMUA_Achr1G18230_001
I
0.683
Cla005423
Citrullus lanatus
Cla005423
I
0.683
MTR_1g069960
Medicago truncatula
MTR_1g069960
I
0.683
Carubv10011585m.g
Capsella rubella
Carubv10011585m.g
I
0.682
evm.TU.supercontig_131.83
Carica papaya
evm.TU.supercontig_131.83
I
0.682
Bra030094
Brassica rapa
Bra030094
I
0.682
Ciclev10009484m.g
Citrus clementina
Ciclev10009484m.g
I
0.682
TCM_031608
Theobroma cacao
TCM_031608
I
0.682
Gorai.009G375700
Gossypium raimondii
Gorai.009G375700
I
0.682
Thhalv10009947m.g
Eutrema salsugineum
Thhalv10009947m.g
I
0.682
orange1.1g028454m.g
Citrus sinensis
orange1.1g028454m.g
I
0.682
Bo3g143340
Brassica oleracea
Bo3g143340
I
0.682
Bo5g055840
Brassica oleracea
Bo5g055840
I
0.682
Bo7g048190
Brassica oleracea
Bo7g048190
I
0.682
ERF12
Arabidopsis thaliana
AT1G28360
I
0.682
PK02998.1
Cannabis sativa
PK02998.1
I
0.682
ERF3
Arabidopsis thaliana
AT1G50640
D
0.682
Bra010881
Brassica rapa
Bra010881
I
0.682
VIT_14s0081g00520
Vitis vinifera
VIT_14s0081g00520
I
0.682
GLYMA06G35710
Glycine max
GLYMA06G35710
I
0.682
Bra032898
Brassica rapa
Bra032898
I
0.682
GLYMA03G31640
Glycine max
GLYMA03G31640
I
0.682
GSMUA_Achr4G06660_001
Musa acuminata
GSMUA_Achr4G06660_001
I
0.682
GLYMA12G26836
Glycine max
GLYMA12G26836
I
0.682
GLYMA13G34920
Glycine max
GLYMA13G34920
I
0.682
GSMUA_Achr3G29290_001
Musa acuminata
GSMUA_Achr3G29290_001
I
0.682
GLYMA12G35550
Glycine max
GLYMA12G35550
I
0.682
27904.m000217
Ricinus communis
27904.m000217
I
0.682
GLYMA03G31930
Glycine max
GLYMA03G31930
I
0.682
Cagra.1822s0023
Capsella grandiflora
Cagra.1822s0023
I
0.682
Ca_12205
Cicer arietinum
Ca_12205
I
0.682
chr3.CM0080.200.nd
Lotus japonicus
chr3.CM0080.200.nd
I
0.682
Bostr.15697s0156
Boechera stricta
Bostr.15697s0156
I
0.682
GSMUA_Achr5G09940_001
Musa acuminata
GSMUA_Achr5G09940_001
I
0.682
ERF12
Arabidopsis lyrata
fgenesh2_kg.1__3004__AT1G28360.1
I
0.682
SapurV1A.1244s0010
Salix purpurea
SapurV1A.1244s0010
I
0.681
SapurV1A.1325s0040
Salix purpurea
SapurV1A.1325s0040
I
0.681
POPTR_0011s11620
Populus trichocarpa
POPTR_0011s11620
I
0.681
POPTR_0001s40770
Populus trichocarpa
POPTR_0001s40770
I
0.681
Eucgr.F01164
Eucalyptus grandis
Eucgr.F01164
I
0.681
PRUPE_ppa010982mg
Prunus persica
PRUPE_ppa010982mg
I
0.680
PDK_20s1354201g001
Phoenix dactylifera
PDK_20s1354201g001
I
0.680
Bra026942
Brassica rapa
Bra026942
I
0.680
Bo8g107780
Brassica oleracea
Bo8g107780
I
0.680
Pm011391
Prunus mume
Pm011391
I
0.680
MDP0000324718
Malus domestica
MDP0000324718
I
0.679
MTR_3g053690
Medicago truncatula
MTR_3g053690
I
0.679
MTR_8g006825
Medicago truncatula
MTR_8g006825
I
0.678
MDP0000868587
Malus domestica
MDP0000868587
I
0.678
ERF4
Arabidopsis thaliana
AT3G15210
D
0.677
Bostr.28625s0184
Boechera stricta
Bostr.28625s0184
I
0.677
POPTR_0005s24110
Populus trichocarpa
POPTR_0005s24110
I
0.677
chr1.CM0375.170.nd
Lotus japonicus
chr1.CM0375.170.nd
I
0.677
Bra001588
Brassica rapa
Bra001588
I
0.677
Thhalv10011689m.g
Eutrema salsugineum
Thhalv10011689m.g
I
0.677
ATERF-4
Arabidopsis lyrata
scaffold_301765.1
I
0.677
Thhalv10003431m.g
Eutrema salsugineum
Thhalv10003431m.g
I
0.677
Bo3g066710
Brassica oleracea
Bo3g066710
I
0.677