MTR_6g465430 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_6g465430 T002913_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.727 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.727 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.706 0.820
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.706 0.820
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.706 0.820
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.706 0.820
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.706 0.840
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.706 0.840
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.706 0.840
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.692 0.760
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.692 0.760
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.681 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.681 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.681 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.681 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.681 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.681 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH26590 AP2 52 103

Links

Other AP2 family TFs
Other Medicago truncatula TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.833
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.811
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.802
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.796
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.793
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.793
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.780
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.774
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.764
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.758
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.752
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.749
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.744
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.742
PK23332.1 Cannabis sativa PK23332.1 I 0.742
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.741
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.741
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.739
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.739
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.738
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.738
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.738
mgf026339m Mimulus guttatus mgf026339m I 0.737
Cla006315 Citrullus lanatus Cla006315 I 0.737
mgf026642m Mimulus guttatus mgf026642m I 0.736
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.736
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.735
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.734
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.734
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.732
Cla002362 Citrullus lanatus Cla002362 I 0.732
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.731
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.731
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.731
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.731
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.730
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.730
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.727
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.727
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.727
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.727
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.727
DREB1D Arabidopsis thaliana AT5G51990 D 0.727
Bra028290 Brassica rapa Bra028290 I 0.727
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.727
Bo9g104770 Brassica oleracea Bo9g104770 I 0.727
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.727
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.727
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.727
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.725
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.725
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.725
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.725
MDP0000198054 Malus domestica MDP0000198054 I 0.725
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.725
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.721
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.721
Cla011674 Citrullus lanatus Cla011674 I 0.720
mgf017136m Mimulus guttatus mgf017136m I 0.720
MDP0000154764 Malus domestica MDP0000154764 I 0.718
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.717
TCM_016175 Theobroma cacao TCM_016175 I 0.717
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.716
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.716
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.716
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.715
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.715
Pm023769 Prunus mume Pm023769 I 0.715
Pm023775 Prunus mume Pm023775 I 0.715
Pm023772 Prunus mume Pm023772 I 0.715
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.715
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.715
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.715
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.715
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.715
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.715
30190.m011120 Ricinus communis 30190.m011120 I 0.714
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.713
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.713
60638.m00016 Ricinus communis 60638.m00016 I 0.713
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.713
mgf019061m Mimulus guttatus mgf019061m I 0.712
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.711
30147.m014313 Ricinus communis 30147.m014313 I 0.711
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.711
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.710
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.710
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.708
DREB1C Arabidopsis thaliana AT4G25470 D 0.706
DREB1A Arabidopsis thaliana AT4G25480 D 0.706
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.704
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.702
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.701
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.700
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.700
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.700
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.699
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.697
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.694
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.692
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.692
DREB1G Oryza sativa OS02G0677300 D 0.692
DREB1G Oryza indica BGIOSGA008804 I 0.692
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.692
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.692
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.692
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.692
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.692
OBART02G27760 Oryza barthii OBART02G27760 I 0.692
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.692
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.692
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.692
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.691
Ca_08732 Cicer arietinum Ca_08732 I 0.690
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.690
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.690
Ca_18948 Cicer arietinum Ca_18948 I 0.690
30190.m011119 Ricinus communis 30190.m011119 I 0.689
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.688
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.688
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.687
Bo01335s010 Brassica oleracea Bo01335s010 I 0.685
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.685
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.685
Bra016763 Brassica rapa Bra016763 I 0.685
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.684
Bo8g108050 Brassica oleracea Bo8g108050 I 0.684
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.684
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.684
Bra026963 Brassica rapa Bra026963 I 0.684
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.684
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.684
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.683
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.683
Ca_04504 Cicer arietinum Ca_04504 I 0.682
Si018262m.g Setaria italica Si018262m.g I 0.682
DREB1F Arabidopsis thaliana AT1G12610 D 0.681
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.681
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.681
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.679
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.678
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.678