MTR_6g465460 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_6g465460 T002915_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.725 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.725 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.714 0.840
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.714 0.840
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.714 0.840
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.714 0.840
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.704 0.840
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.704 0.840
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.704 0.840
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.688 0.760
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.688 0.760
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.688 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.688 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.688 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.688 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.688 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.688 0.760
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.684 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH26592 AP2 52 103

Links

Other AP2 family TFs
Other Medicago truncatula TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.835
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.829
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.825
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.825
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.825
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.811
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.794
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.790
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.767
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.762
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.757
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.757
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.754
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.745
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.745
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.745
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.745
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.745
mgf026642m Mimulus guttatus mgf026642m I 0.744
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.743
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.742
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.740
Cla011674 Citrullus lanatus Cla011674 I 0.740
PK23332.1 Cannabis sativa PK23332.1 I 0.740
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.740
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.738
TCM_016175 Theobroma cacao TCM_016175 I 0.736
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.736
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.736
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.736
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.736
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.736
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.736
mgf026339m Mimulus guttatus mgf026339m I 0.736
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.736
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.735
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.733
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.732
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.730
Cla002362 Citrullus lanatus Cla002362 I 0.730
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.729
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.729
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.729
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.728
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.728
MDP0000154764 Malus domestica MDP0000154764 I 0.728
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.727
Bra028290 Brassica rapa Bra028290 I 0.725
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.725
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.725
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.725
Bo9g104770 Brassica oleracea Bo9g104770 I 0.725
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.725
Pm023769 Prunus mume Pm023769 I 0.725
Pm023775 Prunus mume Pm023775 I 0.725
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.725
Cla006315 Citrullus lanatus Cla006315 I 0.725
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.725
DREB1D Arabidopsis thaliana AT5G51990 D 0.725
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.725
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.724
30190.m011120 Ricinus communis 30190.m011120 I 0.723
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.722
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.722
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.721
mgf019061m Mimulus guttatus mgf019061m I 0.719
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.719
mgf017136m Mimulus guttatus mgf017136m I 0.718
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.717
MDP0000198054 Malus domestica MDP0000198054 I 0.715
DREB1A Arabidopsis thaliana AT4G25480 D 0.714
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.714
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.714
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.711
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.711
30147.m014313 Ricinus communis 30147.m014313 I 0.709
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.709
Pm023772 Prunus mume Pm023772 I 0.709
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.709
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.708
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.706
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.706
DREB1C Arabidopsis thaliana AT4G25470 D 0.704
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.703
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.703
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.703
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.703
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.703
60638.m00016 Ricinus communis 60638.m00016 I 0.703
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.702
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.701
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.700
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.700
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.698
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.697
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.696
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.696
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.695
Bra016763 Brassica rapa Bra016763 I 0.693
Bo01335s010 Brassica oleracea Bo01335s010 I 0.693
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.692
Bo8g108050 Brassica oleracea Bo8g108050 I 0.692
Bra026963 Brassica rapa Bra026963 I 0.692
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.691
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.691
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.688
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.688
Ca_18948 Cicer arietinum Ca_18948 I 0.688
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.688
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.688
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.688
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.688
DREB1G Oryza sativa OS02G0677300 D 0.688
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.688
DREB1F Arabidopsis thaliana AT1G12610 D 0.688
OBART02G27760 Oryza barthii OBART02G27760 I 0.688
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.688
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.688
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.688
DREB1G Oryza indica BGIOSGA008804 I 0.688
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.688
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.687
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.685
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.685
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.684
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.684
OBART04G22220 Oryza barthii OBART04G22220 I 0.684
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.684
DREB1E Oryza indica BGIOSGA016950 I 0.684
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.684
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.684
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.684
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.684
DREB1E Oryza sativa OS04G0572400 D 0.684
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.684
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.682
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.682
Ca_04504 Cicer arietinum Ca_04504 I 0.681
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.681
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.681
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.681
Ca_08732 Cicer arietinum Ca_08732 I 0.680
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.680
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.680
30190.m011119 Ricinus communis 30190.m011119 I 0.679
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.678
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.678
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.678
Si018262m.g Setaria italica Si018262m.g I 0.678