MTR_6g466130 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_6g466130 T002923_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.753 0.880
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.753 0.880
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.753 0.880
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.753 0.880
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.743 0.860
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.743 0.860
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.718 0.840
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.718 0.840
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.718 0.840
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.715 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.715 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.715 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.715 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.715 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.715 0.780
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.712 0.780
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.712 0.780
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.686 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH26617 AP2 64 115

Links

Other AP2 family TFs
Other Medicago truncatula TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.813
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.813
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.809
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.794
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.790
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.785
mgf026642m Mimulus guttatus mgf026642m I 0.783
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.783
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.781
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.779
Cla011674 Citrullus lanatus Cla011674 I 0.779
PK23332.1 Cannabis sativa PK23332.1 I 0.776
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.776
TCM_016175 Theobroma cacao TCM_016175 I 0.775
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.775
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.775
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.775
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.775
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.774
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.774
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.774
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.773
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.772
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.769
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.768
MDP0000154764 Malus domestica MDP0000154764 I 0.767
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.765
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.765
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.764
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.764
Pm023775 Prunus mume Pm023775 I 0.764
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.763
Cla006315 Citrullus lanatus Cla006315 I 0.761
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.760
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.760
mgf017136m Mimulus guttatus mgf017136m I 0.757
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.755
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.754
MDP0000198054 Malus domestica MDP0000198054 I 0.754
DREB1A Arabidopsis thaliana AT4G25480 D 0.753
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.753
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.753
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.753
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.750
Pm023769 Prunus mume Pm023769 I 0.749
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.749
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.749
30147.m014313 Ricinus communis 30147.m014313 I 0.748
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.747
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.746
Cla002362 Citrullus lanatus Cla002362 I 0.744
Bo9g104770 Brassica oleracea Bo9g104770 I 0.743
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.743
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.743
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.743
DREB1D Arabidopsis thaliana AT5G51990 D 0.743
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.743
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.743
Bra028290 Brassica rapa Bra028290 I 0.743
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.742
mgf019061m Mimulus guttatus mgf019061m I 0.741
30190.m011120 Ricinus communis 30190.m011120 I 0.741
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.739
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.739
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.739
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.739
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.739
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.739
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.734
Pm023772 Prunus mume Pm023772 I 0.734
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.733
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.732
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.732
mgf026339m Mimulus guttatus mgf026339m I 0.731
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.731
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.727
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.726
60638.m00016 Ricinus communis 60638.m00016 I 0.725
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.725
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.724
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.724
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.724
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.724
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.724
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.724
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.724
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.723
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.723
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.723
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.721
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.721
Bra016763 Brassica rapa Bra016763 I 0.719
Bo01335s010 Brassica oleracea Bo01335s010 I 0.719
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.719
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.719
30190.m011119 Ricinus communis 30190.m011119 I 0.718
DREB1C Arabidopsis thaliana AT4G25470 D 0.718
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.718
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.718
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.718
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.717
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.717
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.716
DREB1F Arabidopsis thaliana AT1G12610 D 0.715
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.715
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.715
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.715
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.712
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.712
OBART02G27760 Oryza barthii OBART02G27760 I 0.712
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.712
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.712
Bo8g108050 Brassica oleracea Bo8g108050 I 0.712
DREB1G Oryza sativa OS02G0677300 D 0.712
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.712
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.712
DREB1G Oryza indica BGIOSGA008804 I 0.712
Bra026963 Brassica rapa Bra026963 I 0.712
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.712
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.712
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.712
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.712
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.712
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.711
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.711
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.709
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.709
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.708
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.708
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.708
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.707
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.707
Ca_18948 Cicer arietinum Ca_18948 I 0.706
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.704
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.704
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.702
Si018262m.g Setaria italica Si018262m.g I 0.702
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.701
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.701
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.699
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.699
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.697
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.696
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.695
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.692
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.691
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.691
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.690
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.690
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.689
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.687
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.687
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.686
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.686
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.686
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.686
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.686
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.685
Pm019386 Prunus mume Pm019386 I 0.684
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.684
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.681
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.678